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UniProtKB - P9WFL3 (Y3193_MYCTU)

Entry version 25 (16 Oct 2019)
Sequence version 1 (16 Apr 2014)
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Protein

UPF0182 protein Rv3193c

Gene

Rv3193c

Organism
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		MTBH37RV:G185E-7460-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
UPF0182 protein Rv3193cUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Rv3193c
ORF Names:MTV014.37c
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83332 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Actinobacteria › Corynebacteriales › Mycobacteriaceae › Mycobacterium › Mycobacterium tuberculosis complex ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001584 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

Organism-specific databases

Mycobacterium tuberculosis strain H37Rv genome database

More...TubercuListi		Rv3193c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei17 – 39HelicalUniRule annotationAdd BLAST23
Transmembranei59 – 81HelicalUniRule annotationAdd BLAST23
Transmembranei113 – 135HelicalUniRule annotationAdd BLAST23
Transmembranei169 – 191HelicalUniRule annotationAdd BLAST23
Transmembranei212 – 229HelicalUniRule annotationAdd BLAST18
Transmembranei255 – 277HelicalUniRule annotationAdd BLAST23
Transmembranei284 – 306HelicalUniRule annotationAdd BLAST23

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001577241 – 992UPF0182 protein Rv3193cAdd BLAST992

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P9WFL3

PRoteomics IDEntifications database

More...PRIDEi		P9WFL3

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		83332.Rv3193c

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the UPF0182 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105DJZ Bacteria
COG1615 LUCA

KEGG Orthology (KO)

More...KOi		K09118

Identification of Orthologs from Complete Genome Data

More...OMAi		HLRYPQD

Database for complete collections of gene phylogenies

More...PhylomeDBi		P9WFL3

Family and domain databases

HAMAP database of protein families

More...HAMAPi		MF_01600 UPF0182, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR005372 UPF0182

The PANTHER Classification System

More...PANTHERi		PTHR39344 PTHR39344, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03699 UPF0182, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P9WFL3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGMRSAARMP KLTRRSRILI MIALGVIVLL LAGPRLIDAY VDWLWFGELG 
        60         70         80         90        100
YRSVFTTMLA TRIVVCLVAG VVVGGIVFGG LALAYRTRPV FVPDADNDPV 
       110        120        130        140        150
ARYRAVVLAR LRLVGIGIPA AIGLLAGIVA QSYWARIQLF LHGGDFGVRD 
       160        170        180        190        200
PQFGRDLGFY AFELPFYRLM LSYMLVSVFL AFVANLVAHY IFGGIRLSGR 
       210        220        230        240        250
TGALSRSARV QLVSLVGVLV LLKAVAYWLD RYELLSHTRG GKPFTGAGYT 
       260        270        280        290        300
DINAVLPAKL ILMAIALICA AAVFSAIALR DLRIPAIGLV LLLLSSLIVG 
       310        320        330        340        350
AGWPLIVEQI SVKPNAAQKE SEYISRSITA TRQAYGLTSD VVTYRNYSGD 
       360        370        380        390        400
SPATAQQVAA DRATTSNIRL LDPTIVSPAF TQFQQGKNFY YFPDQLSIDR 
       410        420        430        440        450
YLDRNGNLRD YVVAARELNP DRLIDNQRDW INRHTVYTHG NGFIASPANT 
       460        470        480        490        500
VRGIANDPNQ NGGYPEFLVN VVGANGTVVS DGPAPLDQPR IYFGPVISNT 
       510        520        530        540        550
SADYAIVGRN GDDREYDYET NIDTKRYTYT GSGGVPLGGW LARSVFAAKF 
       560        570        580        590        600
AERNFLFSNV IGSNSKILFN RDPAQRVEAV APWLTTDSAV YPAIVNKRLV 
       610        620        630        640        650
WIVDGYTTLD NYPYSELTSL SSATADSNEV AFNRLVPDKK VSYIRNSVKA 
       660        670        680        690        700
TVDAYDGTVT LYQQDEKDPV LKAWMQVFPG TVKPKSDIAP ELAEHLRYPE 
       710        720        730        740        750
DLFKVQRMLL AKYHVNDPVT FFSTSDFWDV PLDPNPTASS YQPPYYIVAK 
       760        770        780        790        800
NIAKDDNSAS YQLISAMNRF KRDYLAAYIS ASSDPATYGN LTVLTIPGQV 
       810        820        830        840        850
NGPKLANNAI TTDPAVSQDL GVIGRDNQNR IRWGNLLTLP VARGGLLYVE 
       860        870        880        890        900
PVYASPGASD AASSYPRLIR VAMMYNDKVG YGPTVRDALT GLFGPGAGAT 
       910        920        930        940        950
ATGIAPTEAA VPPSPAANPP PPASGPQPPP VTAAPPVPVG AVTLSPAKVA 
       960        970        980        990 
ALQEIQAAIG AARDAQKKGD FAAYGSALQR LDEAITKFND AG
Length:992
Mass (Da):107,502
Last modified:April 16, 2014 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEF0F09B7B064261E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AL123456 Genomic DNA Translation: CCP46005.1

Protein sequence database of the Protein Information Resource

More...PIRi		G70950

NCBI Reference Sequences

More...RefSeqi		NP_217709.1, NC_000962.3
WP_003899961.1, NZ_NVQJ01000003.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CCP46005; CCP46005; Rv3193c

Database of genes from NCBI RefSeq genomes

More...GeneIDi		888012

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mtu:Rv3193c
mtv:RVBD_3193c

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL123456 Genomic DNA Translation: CCP46005.1
PIRiG70950
RefSeqiNP_217709.1, NC_000962.3
WP_003899961.1, NZ_NVQJ01000003.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi83332.Rv3193c

Proteomic databases

PaxDbiP9WFL3
PRIDEiP9WFL3

Genome annotation databases

EnsemblBacteriaiCCP46005; CCP46005; Rv3193c
GeneIDi888012
KEGGimtu:Rv3193c
mtv:RVBD_3193c

Organism-specific databases

TubercuListiRv3193c

Phylogenomic databases

eggNOGiENOG4105DJZ Bacteria
COG1615 LUCA
KOiK09118
OMAiHLRYPQD
PhylomeDBiP9WFL3

Enzyme and pathway databases

BioCyciMTBH37RV:G185E-7460-MONOMER

Family and domain databases

HAMAPiMF_01600 UPF0182, 1 hit
InterProiView protein in InterPro
IPR005372 UPF0182
PANTHERiPTHR39344 PTHR39344, 1 hit
PfamiView protein in Pfam
PF03699 UPF0182, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY3193_MYCTU
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P9WFL3
Secondary accession number(s): L0TEL2, O53339
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: April 16, 2014
Last modified: October 16, 2019
This is version 25 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Mycobacterium tuberculosis strains ATCC 25618 / H37Rv and CDC 1551 / Oshkosh
    Mycobacterium tuberculosis strains ATCC 25618 / H37Rv and CDC 1551 / Oshkosh: entries and gene names
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