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Protein

Uncharacterized HTH-type transcriptional regulator YdfF

Gene

ydfF

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi32 – 55H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU05390-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdfF
Gene namesi
Name:ydfF
Ordered Locus Names:BSU05390
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003609961 – 226Uncharacterized HTH-type transcriptional regulator YdfFAdd BLAST226

Proteomic databases

PaxDbiP96683
PRIDEiP96683

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003033

Structurei

3D structure databases

ProteinModelPortaliP96683
SMRiP96683
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 92HTH arsR-typePROSITE-ProRule annotationAdd BLAST92

Phylogenomic databases

eggNOGiENOG4108ZHR Bacteria
COG0640 LUCA
HOGENOMiHOG000257923
InParanoidiP96683
OMAiCPCLDWS
PhylomeDBiP96683

Family and domain databases

CDDicd00090 HTH_ARSR, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011991 ArsR-like_HTH
IPR001845 HTH_ArsR_DNA-bd_dom
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PRINTSiPR00778 HTHARSR
SMARTiView protein in SMART
SM00418 HTH_ARSR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50987 HTH_ARSR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P96683-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNPNIAKISS LLSDPSRSSI LLSLMDGRIH PAGELAYLAN IKPQTASFHL
60 70 80 90 100
NKLLEAKLIS VEKHGRHRYY RLADSDAANV IEQLLHIAPK AKVKSLKESK
110 120 130 140 150
EKKDLHFART CYDHLAGYVG VQMAHSLVEQ GMLKKVDLNF EVTSEGALFF
160 170 180 190 200
SKLGINEEQQ RNKRRAFARC CLDWSERQHH IAGALGNALL VRMLEEEWIV
210 220
RMPKTRAIRI TQSGKIAFEK HLNVKI
Length:226
Mass (Da):25,617
Last modified:May 1, 1997 - v1
Checksum:i96C44D638D2E1ABD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001488 Genomic DNA Translation: BAA19373.1
AL009126 Genomic DNA Translation: CAB12346.1
PIRiD69780
RefSeqiNP_388420.1, NC_000964.3
WP_003244115.1, NZ_JNCM01000031.1

Genome annotation databases

EnsemblBacteriaiCAB12346; CAB12346; BSU05390
GeneIDi938084
KEGGibsu:BSU05390
PATRICifig|224308.179.peg.576

Similar proteinsi

Entry informationi

Entry nameiYDFF_BACSU
AccessioniPrimary (citable) accession number: P96683
Secondary accession number(s): Q797G8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: May 1, 1997
Last modified: September 12, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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