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UniProtKB - P96663 (YDEF_BACSU)
Protein
Uncharacterized HTH-type transcriptional regulator YdeF
Gene
ydeF
Organism
Bacillus subtilis (strain 168)
Status
Functioni
Cofactori
pyridoxal 5'-phosphateBy similarity
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 50 – 69 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 20 |
GO - Molecular functioni
- DNA binding Source: UniProtKB-KW
- DNA-binding transcription factor activity Source: InterPro
- pyridoxal phosphate binding Source: InterPro
- transaminase activity Source: UniProtKB-KW
GO - Biological processi
- biosynthetic process Source: InterPro
Keywordsi
Molecular function | Aminotransferase, DNA-binding, Transferase |
Biological process | Transcription, Transcription regulation |
Ligand | Pyridoxal phosphate |
Enzyme and pathway databases
BioCyci | BSUB:BSU05180-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Uncharacterized HTH-type transcriptional regulator YdeF |
Gene namesi | Name:ydeF Ordered Locus Names:BSU05180 |
Organismi | Bacillus subtilis (strain 168) |
Taxonomic identifieri | 224308 [NCBI] |
Taxonomic lineagei | Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000360695 | 1 – 462 | Uncharacterized HTH-type transcriptional regulator YdeFAdd BLAST | 462 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 308 | N6-(pyridoxal phosphate)lysineBy similarity | 1 |
Proteomic databases
PaxDbi | P96663 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 22 – 90 | HTH gntR-typePROSITE-ProRule annotationAdd BLAST | 69 |
Sequence similaritiesi
In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated
Phylogenomic databases
eggNOGi | COG1167, Bacteria |
InParanoidi | P96663 |
OMAi | NMVFPRH |
Family and domain databases
CDDi | cd07377, WHTH_GntR, 1 hit |
Gene3Di | 1.10.10.10, 1 hit 3.40.640.10, 1 hit 3.90.1150.10, 1 hit |
InterProi | View protein in InterPro IPR004839, Aminotransferase_I/II IPR015424, PyrdxlP-dep_Trfase IPR015421, PyrdxlP-dep_Trfase_major IPR015422, PyrdxlP-dep_Trfase_small IPR000524, Tscrpt_reg_HTH_GntR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00155, Aminotran_1_2, 1 hit PF00392, GntR, 1 hit |
SMARTi | View protein in SMART SM00345, HTH_GNTR, 1 hit |
SUPFAMi | SSF46785, SSF46785, 1 hit SSF53383, SSF53383, 1 hit |
PROSITEi | View protein in PROSITE PS50949, HTH_GNTR, 1 hit |
i Sequence
Sequence statusi: Complete.
P96663-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MPINSFENYP MSWKPSIDKA EKPIYKALAG QLEQDILNGV LLPGTKLPPQ
60 70 80 90 100
RELADYLDLN VSTISKAFKV CELKGLLSAT VGSGTFVSYD ALSNAYLLED
110 120 130 140 150
TKPTHLIEMG AILPDHASYE PLLYQLKNMV HEEDYEKWFS YGRAGESLWQ
160 170 180 190 200
KDAAVKLIQR GGFETSVDHI LFANGGQNAI AATLASLCKP GDRIGVDHHT
210 220 230 240 250
YPGLKTVASL LSVQIVPIKS ENDEMSPESL EYACKNENIK GLYLIPDYHN
260 270 280 290 300
PTTSFMSVEN RRMVADIVKK YNLFVIEDAS YHLLNKNPLP ALASFAPQQV
310 320 330 340 350
IHIASLSKSL APGLRLAYVA VPRQYKEPIS KALYNLNITV SPLLAELTAR
360 370 380 390 400
TIVSNQFEVL IESHREQTIR RNQLVNRYVA GYTCLGVETG IFRWLLLPGK
410 420 430 440 450
MSGAEFEELA ARLGVQVYAA ERFVVGNSCP ERAVRVSVCA PKTLEELEQG
460
LMILRRLLDD LT
Sequence cautioni
The sequence BAA19353 differs from that shown. Reason: Erroneous initiation. Extended N-terminus.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB001488 Genomic DNA Translation: BAA19353.1 Different initiation. AL009126 Genomic DNA Translation: CAB12325.2 |
PIRi | H69777 |
RefSeqi | NP_388399.1, NC_000964.3 WP_003244576.1, NZ_JNCM01000031.1 |
Genome annotation databases
EnsemblBacteriai | CAB12325; CAB12325; BSU_05180 |
GeneIDi | 939911 |
KEGGi | bsu:BSU05180 |
PATRICi | fig|224308.179.peg.553 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB001488 Genomic DNA Translation: BAA19353.1 Different initiation. AL009126 Genomic DNA Translation: CAB12325.2 |
PIRi | H69777 |
RefSeqi | NP_388399.1, NC_000964.3 WP_003244576.1, NZ_JNCM01000031.1 |
3D structure databases
AlphaFoldDBi | P96663 |
SMRi | P96663 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 224308.BSU05180 |
Proteomic databases
PaxDbi | P96663 |
Genome annotation databases
EnsemblBacteriai | CAB12325; CAB12325; BSU_05180 |
GeneIDi | 939911 |
KEGGi | bsu:BSU05180 |
PATRICi | fig|224308.179.peg.553 |
Phylogenomic databases
eggNOGi | COG1167, Bacteria |
InParanoidi | P96663 |
OMAi | NMVFPRH |
Enzyme and pathway databases
BioCyci | BSUB:BSU05180-MONOMER |
Family and domain databases
CDDi | cd07377, WHTH_GntR, 1 hit |
Gene3Di | 1.10.10.10, 1 hit 3.40.640.10, 1 hit 3.90.1150.10, 1 hit |
InterProi | View protein in InterPro IPR004839, Aminotransferase_I/II IPR015424, PyrdxlP-dep_Trfase IPR015421, PyrdxlP-dep_Trfase_major IPR015422, PyrdxlP-dep_Trfase_small IPR000524, Tscrpt_reg_HTH_GntR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00155, Aminotran_1_2, 1 hit PF00392, GntR, 1 hit |
SMARTi | View protein in SMART SM00345, HTH_GNTR, 1 hit |
SUPFAMi | SSF46785, SSF46785, 1 hit SSF53383, SSF53383, 1 hit |
PROSITEi | View protein in PROSITE PS50949, HTH_GNTR, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | YDEF_BACSU | |
Accessioni | P96663Primary (citable) accession number: P96663 Secondary accession number(s): Q797I5 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | January 20, 2009 |
Last sequence update: | January 20, 2009 | |
Last modified: | May 25, 2022 | |
This is version 137 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families