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UniProtKB - P94459 (PPSD_BACSU)

Entry version 122 (18 Sep 2019)
Sequence version 2 (16 Jun 2009)
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Protein

Plipastatin synthase subunit D

Gene

ppsD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Pro, Gln and Tyr as part of the biosynthesis of the lipopeptide antibiotic plipastatin. The Tyr residue is further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains.1 Publication

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

pantetheine 4'-phosphateCuratedNote: Binds 3 phosphopantetheines covalently.Curated

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMultifunctional enzyme, Transferase
Biological processAntibiotic biosynthesis

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BSUB:BSU18310-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Plipastatin synthase subunit D (EC:2.3.1.-)
Alternative name(s):
Peptide synthase 4
Including the following 3 domains:
ATP-dependent proline adenylase
Short name:
ProA 1
Alternative name(s):
Proline activase 1
ATP-dependent glutamine adenylase
Short name:
GlnA
Alternative name(s):
Glutamine activase
ATP-dependent tyrosine adenylase 2
Short name:
TyrA 2
Alternative name(s):
Tyrosine activase 2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ppsD
Synonyms:pps4
Ordered Locus Names:BSU18310
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus subtilis (strain 168)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri224308 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001570 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003608441 – 3603Plipastatin synthase subunit DAdd BLAST3603

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1001O-(pantetheine 4'-phosphoryl)serinePROSITE-ProRule annotation1
Modified residuei2032O-(pantetheine 4'-phosphoryl)serinePROSITE-ProRule annotation1
Modified residuei3069O-(pantetheine 4'-phosphoryl)serinePROSITE-ProRule annotation1

Keywords - PTMi

Phosphopantetheine, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P94459

PRoteomics IDEntifications database

More...PRIDEi		P94459

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		224308.BSU18310

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P94459

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini966 – 1041Carrier 1PROSITE-ProRule annotationAdd BLAST76
Domaini1997 – 2072Carrier 2PROSITE-ProRule annotationAdd BLAST76
Domaini3034 – 3108Carrier 3PROSITE-ProRule annotationAdd BLAST75

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni7 – 1043Domain 1 (proline-activating)Add BLAST1037
Regioni7 – 306Condensation 1Add BLAST300
Regioni490 – 889Adenylation 1Add BLAST400
Regioni1053 – 2069Domain 2 (glutamine-activating)Add BLAST1017
Regioni1053 – 1334Condensation 2Add BLAST282
Regioni1521 – 1924Adenylation 2Add BLAST404
Regioni2084 – 3596Domain 3 (proline-activating)Add BLAST1513
Regioni2084 – 2374Condensation 3Add BLAST291
Regioni2560 – 2956Adenylation 3Add BLAST397
Regioni3116 – 3596EpimerizationAdd BLAST481

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi2178 – 2181Poly-Ala4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ATP-dependent AMP-binding enzyme family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105CEY Bacteria
COG0318 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000229991

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P94459

KEGG Orthology (KO)

More...KOi		K15667

Identification of Orthologs from Complete Genome Data

More...OMAi		YIMPAYL

Database for complete collections of gene phylogenies

More...PhylomeDBi		P94459

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.1200.10, 2 hits
3.30.559.10, 4 hits
3.40.50.12780, 3 hits
3.40.50.1820, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR010071 AA_adenyl_domain
IPR029058 AB_hydrolase
IPR036736 ACP-like_sf
IPR025110 AMP-bd_C
IPR020845 AMP-binding_CS
IPR000873 AMP-dep_Synth/Lig
IPR042099 AMP-dep_Synthh-like_sf
IPR023213 CAT-like_dom_sf
IPR001242 Condensatn
IPR010060 NRPS_synth
IPR020806 PKS_PP-bd
IPR009081 PP-bd_ACP
IPR006162 Ppantetheine_attach_site

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00501 AMP-binding, 3 hits
PF13193 AMP-binding_C, 3 hits
PF00668 Condensation, 4 hits
PF00550 PP-binding, 3 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00823 PKS_PP, 2 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF47336 SSF47336, 3 hits

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01733 AA-adenyl-dom, 3 hits
TIGR01720 NRPS-para261, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00455 AMP_BINDING, 3 hits
PS50075 CARRIER, 3 hits
PS00012 PHOSPHOPANTETHEINE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P94459-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTKANSIQDI YPLSYMQEGM LFHSLLQKDS QAYVEQASFT IEGKVNPQFF 
        60         70         80         90        100
QNSINALVER HDIFRTIFIS QNVSSPQQVV LRERNVIVLE EDITHLNEAE 
       110        120        130        140        150
QSQFIEQWKE KDRDRGFHLQ KDVLMRIALI QTGESQYSCI WTFHHIMMDG 
       160        170        180        190        200
WCLSIVLKEF LHIYASYVNA SPITLEPVQP YGKYIKWLME QDKEQAVSYW 
       210        220        230        240        250
DHYLSGHEQQ TVLPKQKKTK GKSRQEHVTF SFSKEESSRL SELAAREEVT 
       260        270        280        290        300
LSTIFHTIWG ILLQKYNNND DAVFGSVISG RPAEIEGIEH MVGLFINTMP 
       310        320        330        340        350
VRVQGAKTPF LQLIKDMQKD RLAAEAYSYH PLYEIQSRSA VKQGLIDHIL 
       360        370        380        390        400
VFENYPVQQE IQMLNKQEHA SDLFQIHNFT VADETNYSFY LMVAPGEEIH 
       410        420        430        440        450
IKMNYDAEQH DRSFVLSVKE HLLNAVSQIL NNPNLPPEEI DITTDTEKRQ 
       460        470        480        490        500
LIGEITDQTP VYETIHAMFE KQAEKTPDAH AVIDQACSLT YRELNKAANR 
       510        520        530        540        550
LARHLRMKGV VRQEPVAIMM ERSAAFITGV LGILKAGGAI VPVDPHYPAD 
       560        570        580        590        600
RIRYILHDCG CSHVVSQAHL PSSLEDNYII THPEDIESKV DGSNIKSVNN 
       610        620        630        640        650
ADDLLYMIYT SGTTGKPKGV QFEHRNMANL LKFEYTHSGI DFEADVLQFA 
       660        670        680        690        700
TPSFDVCYQE IFSALLKGGT LHIVPEAIKR DVPQLFAFIN KHQTNIVFLP 
       710        720        730        740        750
TAFIKMIFSE RELANSFPDG VKHLIAAGEQ LMISDLFQDV LRKRGIHLHN 
       760        770        780        790        800
HYGPSETHVV STYTIHPGDP IPELPPIGKP IGCTDLYILN HQKQLQPCGV 
       810        820        830        840        850
PGELYISGAS VARGYVNHDK LTSDKFSSDP FKPDVIMYRT GDLARRLEDG 
       860        870        880        890        900
NIEYIGRADN QVKIRGYRIE PQEIEVTLMN HPDISEAAIL IWQDQNGEHE 
       910        920        930        940        950
LCAYYCSVQK LNTIDLRSYM ASELPEYMIP AKWIWVDSIP LTPNGKVDRA 
       960        970        980        990       1000
ALPEPDASIS GNPYTAPRNL LEAKLSQLFE DVLKNGHIGI QDNFFDNGGH 
      1010       1020       1030       1040       1050
SLKATVLMSR IAKEFHVQVS LKDIFAHPTV EGLALIIREA EQNLYAAIEP 
      1060       1070       1080       1090       1100
AEKRDTYPVS SAQKRIYVLQ QLDEGVAYNM PAVLELEGAL DVAKLSAVCK 
      1110       1120       1130       1140       1150
ELISRHEPLR TSFVSGADDE PVQRIHTEVP FTLSKETTIE GFVRPFDLSQ 
      1160       1170       1180       1190       1200
APLFRAGLIE VSNEKHVLLV DMHHIISDGV SVQLLIREFT DLYANRQLKP 
      1210       1220       1230       1240       1250
LRIQYKDYAV WQQKFKKGDS YQKQETYWQQ QFSGDLPILE LPTDKRRPAE 
      1260       1270       1280       1290       1300
RQFIGGKVTF QLDKEITARI KRLAHKNRST LYMTLLALYS AFLSRLSGQD 
      1310       1320       1330       1340       1350
DIVIGSPIAG RPHADLEAVL GMFVNTLALR TRPAGNKTFE EFLKEVRQTA 
      1360       1370       1380       1390       1400
LEAYEHQDYP FEELVDKLGV QREMSRNPLF DTTLVLQNME QQKLKMNDVQ 
      1410       1420       1430       1440       1450
LQWNDLEHPI SKFDISLYVT EHDSELFCQF EYSTALFEKE TIQRWASLFT 
      1460       1470       1480       1490       1500
TLVEHTAASP ETELDNIPIL TKEEERDFIE SCHLFEETGY SMNQTLHYAL 
      1510       1520       1530       1540       1550
EQQAEKTPDQ AAVIFEDGVM TYKELNEQAN RIAWELIGRG VKPETTVAII 
      1560       1570       1580       1590       1600
GKRSPEMLLG IYGILKAGGA YLPIDPDYPE ERISFLLEDS GTNILLLQSA 
      1610       1620       1630       1640       1650
GLHVPEFTGE IVYLNQTNSG LAHRLSNPNV DVLPQSLAYV IYTSGSTGMP 
      1660       1670       1680       1690       1700
KGVEIEHRSA VNFLNSLQSR YQLKHSDMIM HKTSYSFDAS IWELFWWPYA 
      1710       1720       1730       1740       1750
GASVYLLPQG GEKEPEVIAK AIEEQKITAM HFVPSMLHAF LEHIKYRSVP 
      1760       1770       1780       1790       1800
IKTNRLKRVF SGGEQLGTHL VSRFYELLPN VSITNSYGPT EATVEAAFFD 
      1810       1820       1830       1840       1850
CPPHEKLERI PIGKPVHHVR LYLLNQNQRM LPVGCIGELY IAGAGVARGY 
      1860       1870       1880       1890       1900
LNRPALTEER FLEDPFYPGE RMYKTGDVAR WLPDGNVEFL GRTDDQVKIR 
      1910       1920       1930       1940       1950
GYRIEPGEIE AALRSIEGVR EAAVTVRTDS GEPELCAYVE GLQRNEVRAQ 
      1960       1970       1980       1990       2000
LERLLPGYMV PAYMIEMEQW PVTPSGKLDR NALPAPGGAA DAETYTAPRN 
      2010       2020       2030       2040       2050
VTEMKLSQLW EDVLKNGPVG IHDNFFDRGG HSLKATALVS RITKEFDVQV 
      2060       2070       2080       2090       2100
PLKDVFAHPT VEGLATVIRE GTDSPYEAIK PAEKQETYPV SSAQKRIYVL 
      2110       2120       2130       2140       2150
QQLEDGGTGY NMPAVLELEG KLNPERMDRA FQELIKRHES LRTSFEQDEG 
      2160       2170       2180       2190       2200
GDPVQRIHDE VPFTLQTTVL GARTEQEAAA AFIKPFDLSQ APLFRAQIVK 
      2210       2220       2230       2240       2250
VSDERHLLLV DMHHIISDGV SVNILIQEFG ELYNNRKLPA LRIQYKDYAV 
      2260       2270       2280       2290       2300
WQEGFKTGDA YKMQEAYWLK QLEGELPVLD LPADHARPPV RSFAGDKVSF 
      2310       2320       2330       2340       2350
TLEPEVASGL HKLARENGST LYMVLLAAYT AFLSRLSGQE DIIVGSPIAG 
      2360       2370       2380       2390       2400
RPHKDLEPIL GMFVNTLALR TRPEGGKPFV QYLQEVRETA LEAFEHQNYP 
      2410       2420       2430       2440       2450
FEELVDKLEL TRDMSRNPVF DAMLVVQNND YEPLHLHDLQ MKPAQVSHLV 
      2460       2470       2480       2490       2500
SKFDLTLQAS EGDGNIHFLF EYSTALFEKT TIERWASHLT NVLSIIGKNP 
      2510       2520       2530       2540       2550
KVTLNHIDIL TQEERHQLLN EFNTGQANQY GVQTISQLFE QQAARTPKAS 
      2560       2570       2580       2590       2600
ALVSGDKTLT YQELDEWSNG IARALRSRGV KPDTPVGIMM HRSFSMIASI 
      2610       2620       2630       2640       2650
LGVWKAGGCY VPIDPEYPKE RKRYILSDSG TKLLMTINEA DLGVLADFEG 
      2660       2670       2680       2690       2700
EILTIESVEE DDKSPLPQMS SAHHLAYIIY TSGTTGRPKG VMVEHKGIAN 
      2710       2720       2730       2740       2750
TLQWRRNAYA FNETDTILQL FSFSFDGFIT SMFTPLLSGA KAVLLHEEEA 
      2760       2770       2780       2790       2800
KDILAIKHQL SRQRITHMII VPVLYRALLD VVQPEDVKTL RVVTLAGEAA 
      2810       2820       2830       2840       2850
DRELIARSLA ICPHTELANE YGPTENSVAT TVMRHMEKQA YVSIGQPIDG 
      2860       2870       2880       2890       2900
TQVLILNSNH QLQPIGVAGE LCIAGTGLAR GYVNLPELTE RAFTQNPFKP 
      2910       2920       2930       2940       2950
EARMYRTGDA ARWMADGTLE YLGRIDDQVK IRGYRVETKE IESVIRCIKG 
      2960       2970       2980       2990       3000
VKDAAVVAHV TASGQTELSA YVVTKPGLST NAVRSELQNK LPVFMHPAFI 
      3010       3020       3030       3040       3050
EKLDSLPLSP NGKLDRGALP KPVYNHEGER PFLPPSSKME QILADIWKEV 
      3060       3070       3080       3090       3100
LGAEKIGTAD SFFELGGDSI KALQVSARLH RIGKQMAVKD LFSHPTIQEL 
      3110       3120       3130       3140       3150
AAYIRDSDTS SSQAAVEGDV QWSPVQKWFL SQDIKEKHHF NQSVMLHRST 
      3160       3170       3180       3190       3200
SVQEDALRKT LKAITCHHDA LRMVFTQNEQ GKWDQYNRPL SHSDDALYGL 
      3210       3220       3230       3240       3250
QMIDLSAPDG TDGNRPYEPL IKRHVLDIQQ KMDLKNGPLL QAGLFHTIDG 
      3260       3270       3280       3290       3300
DFLFLSAHHL VVDGISWRVL LEDLALGYRQ AAGGEDIKLP PKTSSFKAYA 
      3310       3320       3330       3340       3350
KKLSDYAESQ QLMKQLKYWR EAEEYQTEAL PFDQIDGTRA HEGQRSTISF 
      3360       3370       3380       3390       3400
TLNDKETAAL LKDANSAYNT DTQDMLLASV ILALRHWTNQ SAFKLSLEGH 
      3410       3420       3430       3440       3450
GREDVLKGID VSRTIGWFTA IYPLLIKLNA DLPDSEESMV HVLKTTKDTL 
      3460       3470       3480       3490       3500
RRVPDKGFGY GVIKYLTPPG KKDINFTGAP EISFNYLGQF ESGRTAEVPE 
      3510       3520       3530       3540       3550
EDAFSFSPLG AGGDISTTWN REQSLDISAI AAEGKLTVNM TYDNARFQRK 
      3560       3570       3580       3590       3600
TIEQLSETCR QFLLQLIEHC QNKSETEKTI SDFDDQELTE DALQEIADML 

SFH
Length:3,603
Mass (Da):406,812
Last modified:June 16, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9A30389D45FEC274
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti46N → T in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1293L → W in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1303V → A in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1324V → A in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1530N → T in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1533A → S in CAA84363 (PubMed:7711903).Curated1
Sequence conflicti1743H → Q in CAA84363 (PubMed:7711903).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
Z34883 Genomic DNA Translation: CAA84363.1
AL009126 Genomic DNA Translation: CAB13714.2

Protein sequence database of the Protein Information Resource

More...PIRi		D69681

NCBI Reference Sequences

More...RefSeqi		NP_389713.2, NC_000964.3
WP_009967354.1, NZ_CP019663.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAB13714; CAB13714; BSU18310

Database of genes from NCBI RefSeq genomes

More...GeneIDi		940013

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bsu:BSU18310

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|224308.43.peg.1941

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z34883 Genomic DNA Translation: CAA84363.1
AL009126 Genomic DNA Translation: CAB13714.2
PIRiD69681
RefSeqiNP_389713.2, NC_000964.3
WP_009967354.1, NZ_CP019663.1

3D structure databases

SMRiP94459
ModBaseiSearch...

Protein-protein interaction databases

STRINGi224308.BSU18310

Proteomic databases

PaxDbiP94459
PRIDEiP94459

Genome annotation databases

EnsemblBacteriaiCAB13714; CAB13714; BSU18310
GeneIDi940013
KEGGibsu:BSU18310
PATRICifig|224308.43.peg.1941

Phylogenomic databases

eggNOGiENOG4105CEY Bacteria
COG0318 LUCA
HOGENOMiHOG000229991
InParanoidiP94459
KOiK15667
OMAiYIMPAYL
PhylomeDBiP94459

Enzyme and pathway databases

BioCyciBSUB:BSU18310-MONOMER

Family and domain databases

Gene3Di1.10.1200.10, 2 hits
3.30.559.10, 4 hits
3.40.50.12780, 3 hits
3.40.50.1820, 1 hit
InterProiView protein in InterPro
IPR010071 AA_adenyl_domain
IPR029058 AB_hydrolase
IPR036736 ACP-like_sf
IPR025110 AMP-bd_C
IPR020845 AMP-binding_CS
IPR000873 AMP-dep_Synth/Lig
IPR042099 AMP-dep_Synthh-like_sf
IPR023213 CAT-like_dom_sf
IPR001242 Condensatn
IPR010060 NRPS_synth
IPR020806 PKS_PP-bd
IPR009081 PP-bd_ACP
IPR006162 Ppantetheine_attach_site
PfamiView protein in Pfam
PF00501 AMP-binding, 3 hits
PF13193 AMP-binding_C, 3 hits
PF00668 Condensation, 4 hits
PF00550 PP-binding, 3 hits
SMARTiView protein in SMART
SM00823 PKS_PP, 2 hits
SUPFAMiSSF47336 SSF47336, 3 hits
TIGRFAMsiTIGR01733 AA-adenyl-dom, 3 hits
TIGR01720 NRPS-para261, 1 hit
PROSITEiView protein in PROSITE
PS00455 AMP_BINDING, 3 hits
PS50075 CARRIER, 3 hits
PS00012 PHOSPHOPANTETHEINE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPPSD_BACSU
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P94459
Secondary accession number(s): Q796G3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: June 16, 2009
Last modified: September 18, 2019
This is version 122 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
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