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Entry version 116 (11 Dec 2019)
Sequence version 1 (01 May 1997)
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Protein

Protein LSD1

Gene

LSD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy.10 Publications

Miscellaneous

When expressed in Arabidopsis, Pisum sativa LSD1 interacts with importin alpha via the LSD1-type zinc finger motifs, suggesting that the nuclear import of LSD1 may rely on the interaction between its zinc finger motifs and importin alpha.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processApoptosis, Hypersensitive response, Plant defense

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein LSD1
Alternative name(s):
Protein CHILLING SENSITIVE 4
Protein LESION SIMULATING DISEASE 1
Short name:
AtLSD1
Putative zinc finger LSD1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LSD1
Synonyms:CHS4
Ordered Locus Names:At4g20380
ORF Names:F9F13.30
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G20380

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No visible phenotype under normal growth condition, however cold treatment induces the development of yellowish leaves with necrosis, and treatment with salicylic acid or infection with avirulent pathogen causes a runaway cell death and plant death.2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004084831 – 189Protein LSD1Add BLAST189

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers.1 Publication

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

By methyl viologen.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P94077 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P94077 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with BZIP10 and AMC1 (via N-terminus). Binds to BZIP63.

Interacts with CAT1, CAT2 and CAT3 in a zinc-finger-dependent manner (PubMed:23958864).

Interacts (via N-terminus) with GILP (PubMed:21526181).

5 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Show more details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
13077, 33 interactors

Protein interaction database and analysis system

More...
IntActi
P94077, 69 interactors

Molecular INTeraction database

More...
MINTi
P94077

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni9 – 39LSD1-type zinc-fingerSequence analysisAdd BLAST31
Regioni50 – 80LSD1-type zinc-fingerSequence analysisAdd BLAST31
Regioni97 – 127LSD1-type zinc-fingerSequence analysisAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi40 – 45Poly-ProSequence analysis6

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000264446

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
P94077

Database of Orthologous Groups

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OrthoDBi
1480977at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
P94077

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040319 LSD1-like
IPR005735 Znf_LSD1

The PANTHER Classification System

More...
PANTHERi
PTHR31747 PTHR31747, 1 hit

Pfam protein domain database

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Pfami
View protein in Pfam
PF06943 zf-LSD1, 3 hits

TIGRFAMs; a protein family database

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TIGRFAMsi
TIGR01053 LSD1, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P94077-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH
60 70 80 90 100
IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
110 120 130 140 150
GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST
160 170 180
STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
Length:189
Mass (Da):20,107
Last modified:May 1, 1997 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5EBEE628A30F1550
GO
Isoform 2 (identifier: P94077-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-5: Missing.

Show »
Length:184
Mass (Da):19,563
Checksum:iA92B2E467450780C
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4JUW0F4JUW0_ARATH
LSD1 zinc finger family protein
LSD1 LESION SIMULATING DISEASE, LESION SIMULATING DISEASE 1, At4g20380, F9F13.30, F9F13_30
210Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B450A0A1P8B450_ARATH
LSD1 zinc finger family protein
LSD1 LESION SIMULATING DISEASE, LESION SIMULATING DISEASE 1, At4g20380, F9F13.30, F9F13_30
129Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAH57095 differs from that shown. Intron retention.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0411041 – 5Missing in isoform 2. 3 Publications5

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
U87833 mRNA Translation: AAC49660.1
U87834 Genomic DNA Translation: AAC49661.1
AL080253 Genomic DNA Translation: CAB45804.1
AL161553 Genomic DNA Translation: CAB79038.1
CP002687 Genomic DNA Translation: AEE84315.1
CP002687 Genomic DNA Translation: AEE84316.1
CP002687 Genomic DNA Translation: AEE84317.1
CP002687 Genomic DNA Translation: AEE84318.1
CP002687 Genomic DNA Translation: AEE84319.1
CP002687 Genomic DNA Translation: AEE84320.1
CP002687 Genomic DNA Translation: AEE84321.1
AY080824 mRNA Translation: AAL87301.1
AY117316 mRNA Translation: AAM51391.1
AK318980 mRNA Translation: BAH57095.1 Sequence problems.
AY087794 mRNA Translation: AAM65330.1

Protein sequence database of the Protein Information Resource

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PIRi
T10580

NCBI Reference Sequences

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RefSeqi
NP_001031678.1, NM_001036601.1 [P94077-2]
NP_001031679.1, NM_001036602.2 [P94077-2]
NP_001031680.2, NM_001036603.2 [P94077-2]
NP_001078413.1, NM_001084944.2 [P94077-1]
NP_567599.3, NM_118157.5 [P94077-2]
NP_849548.1, NM_179217.4 [P94077-2]
NP_849549.1, NM_179218.4 [P94077-1]

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT4G20380.1; AT4G20380.1; AT4G20380 [P94077-2]
AT4G20380.2; AT4G20380.2; AT4G20380 [P94077-1]
AT4G20380.3; AT4G20380.3; AT4G20380 [P94077-2]
AT4G20380.4; AT4G20380.4; AT4G20380 [P94077-2]
AT4G20380.5; AT4G20380.5; AT4G20380 [P94077-2]
AT4G20380.6; AT4G20380.6; AT4G20380 [P94077-2]
AT4G20380.7; AT4G20380.7; AT4G20380 [P94077-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
827786

Gramene; a comparative resource for plants

More...
Gramenei
AT4G20380.1; AT4G20380.1; AT4G20380 [P94077-2]
AT4G20380.2; AT4G20380.2; AT4G20380 [P94077-1]
AT4G20380.3; AT4G20380.3; AT4G20380 [P94077-2]
AT4G20380.4; AT4G20380.4; AT4G20380 [P94077-2]
AT4G20380.5; AT4G20380.5; AT4G20380 [P94077-2]
AT4G20380.6; AT4G20380.6; AT4G20380 [P94077-2]
AT4G20380.7; AT4G20380.7; AT4G20380 [P94077-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT4G20380

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U87833 mRNA Translation: AAC49660.1
U87834 Genomic DNA Translation: AAC49661.1
AL080253 Genomic DNA Translation: CAB45804.1
AL161553 Genomic DNA Translation: CAB79038.1
CP002687 Genomic DNA Translation: AEE84315.1
CP002687 Genomic DNA Translation: AEE84316.1
CP002687 Genomic DNA Translation: AEE84317.1
CP002687 Genomic DNA Translation: AEE84318.1
CP002687 Genomic DNA Translation: AEE84319.1
CP002687 Genomic DNA Translation: AEE84320.1
CP002687 Genomic DNA Translation: AEE84321.1
AY080824 mRNA Translation: AAL87301.1
AY117316 mRNA Translation: AAM51391.1
AK318980 mRNA Translation: BAH57095.1 Sequence problems.
AY087794 mRNA Translation: AAM65330.1
PIRiT10580
RefSeqiNP_001031678.1, NM_001036601.1 [P94077-2]
NP_001031679.1, NM_001036602.2 [P94077-2]
NP_001031680.2, NM_001036603.2 [P94077-2]
NP_001078413.1, NM_001084944.2 [P94077-1]
NP_567599.3, NM_118157.5 [P94077-2]
NP_849548.1, NM_179217.4 [P94077-2]
NP_849549.1, NM_179218.4 [P94077-1]

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi13077, 33 interactors
IntActiP94077, 69 interactors
MINTiP94077

Genome annotation databases

EnsemblPlantsiAT4G20380.1; AT4G20380.1; AT4G20380 [P94077-2]
AT4G20380.2; AT4G20380.2; AT4G20380 [P94077-1]
AT4G20380.3; AT4G20380.3; AT4G20380 [P94077-2]
AT4G20380.4; AT4G20380.4; AT4G20380 [P94077-2]
AT4G20380.5; AT4G20380.5; AT4G20380 [P94077-2]
AT4G20380.6; AT4G20380.6; AT4G20380 [P94077-2]
AT4G20380.7; AT4G20380.7; AT4G20380 [P94077-1]
GeneIDi827786
GrameneiAT4G20380.1; AT4G20380.1; AT4G20380 [P94077-2]
AT4G20380.2; AT4G20380.2; AT4G20380 [P94077-1]
AT4G20380.3; AT4G20380.3; AT4G20380 [P94077-2]
AT4G20380.4; AT4G20380.4; AT4G20380 [P94077-2]
AT4G20380.5; AT4G20380.5; AT4G20380 [P94077-2]
AT4G20380.6; AT4G20380.6; AT4G20380 [P94077-2]
AT4G20380.7; AT4G20380.7; AT4G20380 [P94077-1]
KEGGiath:AT4G20380

Organism-specific databases

AraportiAT4G20380

Phylogenomic databases

HOGENOMiHOG000264446
InParanoidiP94077
OrthoDBi1480977at2759
PhylomeDBiP94077

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P94077

Gene expression databases

ExpressionAtlasiP94077 baseline and differential
GenevisibleiP94077 AT

Family and domain databases

InterProiView protein in InterPro
IPR040319 LSD1-like
IPR005735 Znf_LSD1
PANTHERiPTHR31747 PTHR31747, 1 hit
PfamiView protein in Pfam
PF06943 zf-LSD1, 3 hits
TIGRFAMsiTIGR01053 LSD1, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLSD1_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P94077
Secondary accession number(s): C0Z316, Q8RXL2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: May 1, 1997
Last modified: December 11, 2019
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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