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UniProtKB - P93024 (ARFE_ARATH)

Entry version 164 (07 Oct 2020)
Sequence version 3 (01 May 1999)
Previous versions | rss
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Protein

Auxin response factor 5

Gene

ARF5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity.3 Publications

Miscellaneous

Absence of the protein probably causes early embryonic lethality. Premature stop codons are associated with vascular defects.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi158 – 260TF-B3PROSITE-ProRule annotationAdd BLAST103

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processAuxin signaling pathway, Transcription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Auxin response factor 5
Alternative name(s):
Auxin-responsive protein IAA24
Transcription factor MONOPTEROS
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ARF5
Synonyms:IAA24, MP
Ordered Locus Names:At1g19850
ORF Names:F6F9.10
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT1G19850

The Arabidopsis Information Resource

More...TAIRi		locus:2035454, AT1G19850

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001115091 – 902Auxin response factor 5Add BLAST902

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P93024

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		246991

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P93024

MetOSite database of methionine sulfoxide sites

More...MetOSitei		P93024

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs.1 Publication

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

In early embryo and during organ development.

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		P93024, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		P93024, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimers and heterodimers.

Interacts with BRX and the auxin-responsive proteins IAA1, IAA12 (BODENLOS), IAA17 and ARF7.

3 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		23812, 37 interactors

Protein interaction database and analysis system

More...IntActi		P93024, 36 interactors

STRING: functional protein association networks

More...STRINGi		3702.AT1G19850.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1902
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P93024

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini793 – 877PB1PROSITE-ProRule annotationAdd BLAST85

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi23 – 28Poly-Thr6
Compositional biasi282 – 289Poly-Ala8
Compositional biasi445 – 499Met-richAdd BLAST55
Compositional biasi471 – 675Gln-richAdd BLAST205

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ARF family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QQ0Y, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_002626_2_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P93024

KEGG Orthology (KO)

More...KOi		K14486

Database of Orthologous Groups

More...OrthoDBi		155049at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		P93024

Family and domain databases

Conserved Domains Database

More...CDDi		cd10017, B3_DNA, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.330.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR033389, AUX/IAA_dom
IPR010525, Auxin_resp
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR000270, PB1_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02309, AUX_IAA, 1 hit
PF06507, Auxin_resp, 1 hit
PF02362, B3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01019, B3, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF101936, SSF101936, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50863, B3, 1 hit
PS51745, PB1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

P93024-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV 
        60         70         80         90        100
INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP 
       110        120        130        140        150
NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG 
       160        170        180        190        200
SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV 
       210        220        230        240        250
RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS 
       260        270        280        290        300
QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP 
       310        320        330        340        350
RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI 
       360        370        380        390        400
SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT 
       410        420        430        440        450
SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL 
       460        470        480        490        500
MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV 
       510        520        530        540        550
QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE 
       560        570        580        590        600
QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS 
       610        620        630        640        650
DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS 
       660        670        680        690        700
PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN 
       710        720        730        740        750
TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS 
       760        770        780        790        800
RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK 
       810        820        830        840        850
TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES 
       860        870        880        890        900
DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS 

VS
Length:902
Mass (Da):99,650
Last modified:May 1, 1999 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD20D348369757F09
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AQ60A0A1P8AQ60_ARATH
Auxin response factor
MP ARF5, AUXIN RESPONSE FACTOR 5, IAA24, MONOPTEROS, TRANSCRIPTION FACTOR IAA24
891Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAG12546 differs from that shown. Reason: Erroneous gene model prediction.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti439Y → F in strain; cv. Ag-0. 1 Publication1
Natural varianti526M → T in strain: cv. Cvi-1. 1 Publication1
Natural varianti539 – 542Missing in strain: cv. Kas-1. 4
Natural varianti796T → I1 Publication1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF037228 Genomic DNA Translation: AAC39410.1
AF037229 mRNA Translation: AAC60794.1
AC007797 Genomic DNA Translation: AAG12546.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29906.1
AF334716 mRNA Translation: AAG50094.1
BT002050 mRNA Translation: AAN72061.1
BT008805 mRNA Translation: AAP68244.1
AB199792 mRNA Translation: BAE48152.1
U79557 mRNA Translation: AAB92476.1
EF598523 Genomic DNA Translation: ABR09007.1
EF598524 Genomic DNA Translation: ABR09008.1
EF598525 Genomic DNA Translation: ABR09009.1
EF598526 Genomic DNA Translation: ABR09010.1
EF598527 Genomic DNA Translation: ABR09011.1
EF598528 Genomic DNA Translation: ABR09012.1
EF598529 Genomic DNA Translation: ABR09013.1
EF598530 Genomic DNA Translation: ABR09014.1
EF598531 Genomic DNA Translation: ABR09015.1
EF598532 Genomic DNA Translation: ABR09016.1
EF598533 Genomic DNA Translation: ABR09017.1
EF598534 Genomic DNA Translation: ABR09018.1
EF598535 Genomic DNA Translation: ABR09019.1
EF598536 Genomic DNA Translation: ABR09020.1
EF598537 Genomic DNA Translation: ABR09021.1
EF598538 Genomic DNA Translation: ABR09022.1
EF598539 Genomic DNA Translation: ABR09023.1
EF598540 Genomic DNA Translation: ABR09024.1
EF598541 Genomic DNA Translation: ABR09025.1
EF598542 Genomic DNA Translation: ABR09026.1
EF598543 Genomic DNA Translation: ABR09027.1
EF598544 Genomic DNA Translation: ABR09028.1
EF598545 Genomic DNA Translation: ABR09029.1
EF598546 Genomic DNA Translation: ABR09030.1

Protein sequence database of the Protein Information Resource

More...PIRi		G86331
T51807

NCBI Reference Sequences

More...RefSeqi		NP_173414.1, NM_101840.3

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT1G19850.1; AT1G19850.1; AT1G19850

Database of genes from NCBI RefSeq genomes

More...GeneIDi		838573

Gramene; a comparative resource for plants

More...Gramenei		AT1G19850.1; AT1G19850.1; AT1G19850

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT1G19850

Keywords - Coding sequence diversityi

Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF037228 Genomic DNA Translation: AAC39410.1
AF037229 mRNA Translation: AAC60794.1
AC007797 Genomic DNA Translation: AAG12546.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29906.1
AF334716 mRNA Translation: AAG50094.1
BT002050 mRNA Translation: AAN72061.1
BT008805 mRNA Translation: AAP68244.1
AB199792 mRNA Translation: BAE48152.1
U79557 mRNA Translation: AAB92476.1
EF598523 Genomic DNA Translation: ABR09007.1
EF598524 Genomic DNA Translation: ABR09008.1
EF598525 Genomic DNA Translation: ABR09009.1
EF598526 Genomic DNA Translation: ABR09010.1
EF598527 Genomic DNA Translation: ABR09011.1
EF598528 Genomic DNA Translation: ABR09012.1
EF598529 Genomic DNA Translation: ABR09013.1
EF598530 Genomic DNA Translation: ABR09014.1
EF598531 Genomic DNA Translation: ABR09015.1
EF598532 Genomic DNA Translation: ABR09016.1
EF598533 Genomic DNA Translation: ABR09017.1
EF598534 Genomic DNA Translation: ABR09018.1
EF598535 Genomic DNA Translation: ABR09019.1
EF598536 Genomic DNA Translation: ABR09020.1
EF598537 Genomic DNA Translation: ABR09021.1
EF598538 Genomic DNA Translation: ABR09022.1
EF598539 Genomic DNA Translation: ABR09023.1
EF598540 Genomic DNA Translation: ABR09024.1
EF598541 Genomic DNA Translation: ABR09025.1
EF598542 Genomic DNA Translation: ABR09026.1
EF598543 Genomic DNA Translation: ABR09027.1
EF598544 Genomic DNA Translation: ABR09028.1
EF598545 Genomic DNA Translation: ABR09029.1
EF598546 Genomic DNA Translation: ABR09030.1
PIRiG86331
T51807
RefSeqiNP_173414.1, NM_101840.3

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4CHKX-ray2.85A/B/C/D/E/F/G/H779-902[»]
4LDUX-ray2.15A1-390[»]
SMRiP93024
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi23812, 37 interactors
IntActiP93024, 36 interactors
STRINGi3702.AT1G19850.1

PTM databases

iPTMnetiP93024
MetOSiteiP93024

Proteomic databases

PaxDbiP93024
ProteomicsDBi246991

Genome annotation databases

EnsemblPlantsiAT1G19850.1; AT1G19850.1; AT1G19850
GeneIDi838573
GrameneiAT1G19850.1; AT1G19850.1; AT1G19850
KEGGiath:AT1G19850

Organism-specific databases

AraportiAT1G19850
TAIRilocus:2035454, AT1G19850

Phylogenomic databases

eggNOGiENOG502QQ0Y, Eukaryota
HOGENOMiCLU_002626_2_1_1
InParanoidiP93024
KOiK14486
OrthoDBi155049at2759
PhylomeDBiP93024

Miscellaneous databases

Protein Ontology

More...PROi		PR:P93024

Gene expression databases

ExpressionAtlasiP93024, baseline and differential
GenevisibleiP93024, AT

Family and domain databases

CDDicd10017, B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR033389, AUX/IAA_dom
IPR010525, Auxin_resp
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR000270, PB1_dom
PfamiView protein in Pfam
PF02309, AUX_IAA, 1 hit
PF06507, Auxin_resp, 1 hit
PF02362, B3, 1 hit
SMARTiView protein in SMART
SM01019, B3, 1 hit
SUPFAMiSSF101936, SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863, B3, 1 hit
PS51745, PB1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiARFE_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P93024
Secondary accession number(s): A5YYU1
, A5YYU8, A5YYW1, A5YYW2, O64965, Q33DU8, Q9FXI3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: May 1, 1999
Last modified: October 7, 2020
This is version 164 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
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