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Entry version 155 (08 May 2019)
Sequence version 2 (26 Apr 2004)
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Protein

Auxin response factor 7

Gene

ARF7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5.5 Publications

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi127 – 229TF-B3PROSITE-ProRule annotationAdd BLAST103

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processAuxin signaling pathway, Transcription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Auxin response factor 7
Alternative name(s):
Auxin-responsive protein IAA21/IAA23/IAA25
Protein BIPOSTO
Protein NON-PHOTOTROPIC HYPOCOTYL 4
Protein TRANSPORT INHIBITOR RESPONSE 5
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ARF7
Synonyms:BIP, IAA21, IAA23, IAA25, NPH4, TIR5
Ordered Locus Names:At5g20730
ORF Names:T1M15.130
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G20730

The Arabidopsis Information Resource

More...
TAIRi
locus:2180469 AT5G20730

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi1041K → A: Loss of oligomerization. 1 Publication1
Mutagenesisi1091D → A: Loss of oligomerization; when associated with A-1095. Loss of oligomerization; when associated with A-1041 and A-1095. 1 Publication1
Mutagenesisi1095D → A: Loss of oligomerization; when associated with A-1091. Loss of oligomerization; when associated with A-1041 and A-1091. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001115111 – 1164Auxin response factor 7Add BLAST1164

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P93022

PRoteomics IDEntifications database

More...
PRIDEi
P93022

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in the whole plant.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P93022 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P93022 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimers and heterodimers (PubMed:10476078, PubMed:21734647).

Interacts with the auxin-responsive proteins IAA1 and IAA12 (BODENLOS)(PubMed:14973283, PubMed:21734647).

Interacts (via PB1 domain) with IAA17 (via PB1 domain) (PubMed:24706860, PubMed:21734647).

Interacts with IAA19 (PubMed:14729917, PubMed:21734647).

Interacts with ARF5 (PubMed:17259263, PubMed:21734647).

6 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
17471, 35 interactors

Database of interacting proteins

More...
DIPi
DIP-34948N

Protein interaction database and analysis system

More...
IntActi
P93022, 26 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT5G20730.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

11164
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P93022

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1037 – 1130PB1PROSITE-ProRule annotationAdd BLAST94

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi479 – 820Gln-richAdd BLAST342

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The PB1 domain provides both positive and negative electrostatic interfaces for directional protein interaction.1 Publication

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ARF family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IHYA Eukaryota
ENOG410YDIT LUCA

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
P93022

KEGG Orthology (KO)

More...
KOi
K14486

Database of Orthologous Groups

More...
OrthoDBi
116399at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd10017 B3_DNA, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
2.40.330.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR033389 AUX/IAA_dom
IPR010525 Auxin_resp
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR000270 PB1_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02309 AUX_IAA, 1 hit
PF06507 Auxin_resp, 1 hit
PF02362 B3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01019 B3, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101936 SSF101936, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50863 B3, 1 hit
PS51745 PB1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: P93022-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH
60 70 80 90 100
SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
110 120 130 140 150
PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE
160 170 180 190 200
KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
210 220 230 240 250
STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL
260 270 280 290 300
AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
310 320 330 340 350
FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV
360 370 380 390 400
SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
410 420 430 440 450
SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL
460 470 480 490 500
HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
510 520 530 540 550
QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ
560 570 580 590 600
SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
610 620 630 640 650
QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP
660 670 680 690 700
PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
710 720 730 740 750
QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ
760 770 780 790 800
FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
810 820 830 840 850
NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN
860 870 880 890 900
NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
910 920 930 940 950
QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL
960 970 980 990 1000
LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1010 1020 1030 1040 1050
TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR
1060 1070 1080 1090 1100
SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1110 1120 1130 1140 1150
DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW
1160
RGHYDDNSAT SFNR
Length:1,164
Mass (Da):128,886
Last modified:April 26, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6A2858510130F5B1
GO
Isoform 2 (identifier: P93022-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     270-270: R → RW

Note: May be due to a competing donor splice site. No experimental confirmation available.
Show »
Length:1,165
Mass (Da):129,072
Checksum:i3E203B46178E2002
GO
Isoform 3 (identifier: P93022-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1144-1158: Missing.

Note: Incomplete sequence. May be due to exon skipping. No experimental confirmation available.
Show »
Length:1,149
Mass (Da):127,254
Checksum:iA402395A65B32EE5
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4K5M5F4K5M5_ARATH
Auxin response factor
NPH4 ARF7, AUXIN RESPONSE FACTOR 7, BIP, BIPOSTO, IAA21
1,150Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAB92474 differs from that shown. Reason: Frameshift at several positions.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti108D → N in AAD04807 (Ref. 3) Curated1
Sequence conflicti205L → F in AAD04807 (Ref. 3) Curated1
Sequence conflicti327K → E in AAD04807 (Ref. 3) Curated1
Sequence conflicti470H → D in AAD04807 (Ref. 3) Curated1
Sequence conflicti626S → A in AAD02218 (PubMed:10318972).Curated1
Sequence conflicti637Q → H in AAD02218 (PubMed:10318972).Curated1
Sequence conflicti800N → I in AAD04807 (Ref. 3) Curated1
Sequence conflicti839 – 853Missing in AAB92475 (PubMed:9342315).CuratedAdd BLAST15
Sequence conflicti920T → N in AAB92475 (PubMed:9342315).Curated1
Sequence conflicti1038 – 1052Missing in AAB92475 (PubMed:9342315).CuratedAdd BLAST15

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_010090270R → RW in isoform 2. 1 Publication1
Alternative sequenceiVSP_0100911144 – 1158Missing in isoform 3. 1 PublicationAdd BLAST15

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF042195 mRNA Translation: AAD02218.1
AY008392 Genomic DNA Translation: AAG35177.1
AY669789 mRNA Translation: AAT67073.1
AF022368 mRNA Translation: AAD04807.1
AF186466 Genomic DNA Translation: AAF71831.1
AF296832 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92884.1
CP002688 Genomic DNA Translation: AED92885.1
AY080595 mRNA Translation: AAL85006.1
U49077 mRNA Translation: AAB84358.1
U79555 mRNA Translation: AAB92474.1 Frameshift.
U79556 mRNA Translation: AAB92475.1
AK226185 mRNA Translation: BAE98350.1

NCBI Reference Sequences

More...
RefSeqi
NP_851046.1, NM_180715.1 [P93022-2]
NP_851047.1, NM_180716.3 [P93022-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G20730.1; AT5G20730.1; AT5G20730 [P93022-2]
AT5G20730.2; AT5G20730.2; AT5G20730 [P93022-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
832196

Gramene; a comparative resource for plants

More...
Gramenei
AT5G20730.1; AT5G20730.1; AT5G20730 [P93022-2]
AT5G20730.2; AT5G20730.2; AT5G20730 [P93022-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G20730

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF042195 mRNA Translation: AAD02218.1
AY008392 Genomic DNA Translation: AAG35177.1
AY669789 mRNA Translation: AAT67073.1
AF022368 mRNA Translation: AAD04807.1
AF186466 Genomic DNA Translation: AAF71831.1
AF296832 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92884.1
CP002688 Genomic DNA Translation: AED92885.1
AY080595 mRNA Translation: AAL85006.1
U49077 mRNA Translation: AAB84358.1
U79555 mRNA Translation: AAB92474.1 Frameshift.
U79556 mRNA Translation: AAB92475.1
AK226185 mRNA Translation: BAE98350.1
RefSeqiNP_851046.1, NM_180715.1 [P93022-2]
NP_851047.1, NM_180716.3 [P93022-1]

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4NJ6X-ray2.40A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P1036-1126[»]
4NJ7X-ray3.00A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P1036-1126[»]
SMRiP93022
ModBaseiSearch...

Protein-protein interaction databases

BioGridi17471, 35 interactors
DIPiDIP-34948N
IntActiP93022, 26 interactors
STRINGi3702.AT5G20730.1

Proteomic databases

PaxDbiP93022
PRIDEiP93022

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G20730.1; AT5G20730.1; AT5G20730 [P93022-2]
AT5G20730.2; AT5G20730.2; AT5G20730 [P93022-1]
GeneIDi832196
GrameneiAT5G20730.1; AT5G20730.1; AT5G20730 [P93022-2]
AT5G20730.2; AT5G20730.2; AT5G20730 [P93022-1]
KEGGiath:AT5G20730

Organism-specific databases

AraportiAT5G20730
TAIRilocus:2180469 AT5G20730

Phylogenomic databases

eggNOGiENOG410IHYA Eukaryota
ENOG410YDIT LUCA
InParanoidiP93022
KOiK14486
OrthoDBi116399at2759

Miscellaneous databases

Protein Ontology

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PROi
PR:P93022

Gene expression databases

ExpressionAtlasiP93022 baseline and differential
GenevisibleiP93022 AT

Family and domain databases

CDDicd10017 B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR033389 AUX/IAA_dom
IPR010525 Auxin_resp
IPR003340 B3_DNA-bd
IPR015300 DNA-bd_pseudobarrel_sf
IPR000270 PB1_dom
PfamiView protein in Pfam
PF02309 AUX_IAA, 1 hit
PF06507 Auxin_resp, 1 hit
PF02362 B3, 1 hit
SMARTiView protein in SMART
SM01019 B3, 1 hit
SUPFAMiSSF101936 SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863 B3, 1 hit
PS51745 PB1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiARFG_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P93022
Secondary accession number(s): O24411
, P93023, Q0WWZ8, Q5IRX8, Q8RXZ7, Q9LCZ5, Q9SBK4, Q9SYQ6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: April 26, 2004
Last modified: May 8, 2019
This is version 155 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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