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Protein

Pentatricopeptide repeat-containing protein At2g33680

Gene

PCMP-E19

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g33680
Gene namesi
Name:PCMP-E19
Ordered Locus Names:At2g33680
ORF Names:T1B8.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G33680
TAIRilocus:2057630 AT2G33680

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560401 – 727Pentatricopeptide repeat-containing protein At2g33680Add BLAST727

Proteomic databases

PaxDbiP93005

PTM databases

iPTMnetiP93005

Expressioni

Gene expression databases

ExpressionAtlasiP93005 baseline and differential
GenevisibleiP93005 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G33680.1

Structurei

3D structure databases

ProteinModelPortaliP93005
SMRiP93005
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati13 – 47PPR 1Add BLAST35
Repeati48 – 78PPR 2Add BLAST31
Repeati79 – 116PPR 3Add BLAST38
Repeati117 – 150PPR 4Add BLAST34
Repeati152 – 182PPR 5Add BLAST31
Repeati183 – 213PPR 6Add BLAST31
Repeati220 – 254PPR 7Add BLAST35
Repeati255 – 285PPR 8Add BLAST31
Repeati286 – 320PPR 9Add BLAST35
Repeati321 – 355PPR 10Add BLAST35
Repeati356 – 386PPR 11Add BLAST31
Repeati387 – 421PPR 12Add BLAST35
Repeati422 – 456PPR 13Add BLAST35
Repeati457 – 487PPR 14Add BLAST31
Repeati488 – 522PPR 15Add BLAST35
Repeati523 – 553PPR 16Add BLAST31
Repeati559 – 593PPR 17Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni594 – 669Type E motifAdd BLAST76
Regioni670 – 700Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiP93005
OMAiCLQERDV
OrthoDBiEOG093603EX
PhylomeDBiP93005

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

P93005-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHPSTFQTEL NPHTSTLLKK LTHHSQQRNL VAGRAVHGQI IRTGASTCIQ
60 70 80 90 100
HANVLVNFYA KCGKLAKAHS IFNAIICKDV VSWNSLITGY SQNGGISSSY
110 120 130 140 150
TVMQLFREMR AQDILPNAYT LAGIFKAESS LQSSTVGRQA HALVVKMSSF
160 170 180 190 200
GDIYVDTSLV GMYCKAGLVE DGLKVFAYMP ERNTYTWSTM VSGYATRGRV
210 220 230 240 250
EEAIKVFNLF LREKEEGSDS DYVFTAVLSS LAATIYVGLG RQIHCITIKN
260 270 280 290 300
GLLGFVALSN ALVTMYSKCE SLNEACKMFD SSGDRNSITW SAMVTGYSQN
310 320 330 340 350
GESLEAVKLF SRMFSAGIKP SEYTIVGVLN ACSDICYLEE GKQLHSFLLK
360 370 380 390 400
LGFERHLFAT TALVDMYAKA GCLADARKGF DCLQERDVAL WTSLISGYVQ
410 420 430 440 450
NSDNEEALIL YRRMKTAGII PNDPTMASVL KACSSLATLE LGKQVHGHTI
460 470 480 490 500
KHGFGLEVPI GSALSTMYSK CGSLEDGNLV FRRTPNKDVV SWNAMISGLS
510 520 530 540 550
HNGQGDEALE LFEEMLAEGM EPDDVTFVNI ISACSHKGFV ERGWFYFNMM
560 570 580 590 600
SDQIGLDPKV DHYACMVDLL SRAGQLKEAK EFIESANIDH GLCLWRILLS
610 620 630 640 650
ACKNHGKCEL GVYAGEKLMA LGSRESSTYV QLSGIYTALG RMRDVERVWK
660 670 680 690 700
HMRANGVSKE VGCSWIELKN QYHVFVVGDT MHPMIEETKD LVCLVSRQMI
710 720
EEGFVTVLDS SFVEEEEGTQ LSTSFII
Length:727
Mass (Da):80,309
Last modified:May 1, 1997 - v1
Checksum:iC2013059664A54BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U78721 Genomic DNA Translation: AAC69139.1
CP002685 Genomic DNA Translation: AEC08868.1
CP002685 Genomic DNA Translation: ANM61541.1
CP002685 Genomic DNA Translation: ANM61544.1
PIRiC84748
RefSeqiNP_001318343.1, NM_001336461.1
NP_001323756.1, NM_001336467.1
NP_180924.1, NM_128926.1
UniGeneiAt.66302

Genome annotation databases

EnsemblPlantsiAT2G33680.1; AT2G33680.1; AT2G33680
AT2G33680.7; AT2G33680.7; AT2G33680
AT2G33680.8; AT2G33680.8; AT2G33680
GeneIDi817933
GrameneiAT2G33680.1; AT2G33680.1; AT2G33680
AT2G33680.7; AT2G33680.7; AT2G33680
AT2G33680.8; AT2G33680.8; AT2G33680
KEGGiath:AT2G33680

Similar proteinsi

Entry informationi

Entry nameiPP181_ARATH
AccessioniPrimary (citable) accession number: P93005
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 1997
Last modified: April 25, 2018
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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