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Protein

60S ribosomal protein L13

Gene

rpl-13

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13
Gene namesi
Name:rpl-13
ORF Names:C32E8.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC32E8.2a ; CE08526 ; WBGene00004425 ; rpl-13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001929271 – 20760S ribosomal protein L13Add BLAST207

Proteomic databases

EPDiP91128
PaxDbiP91128
PeptideAtlasiP91128
PRIDEiP91128

PTM databases

iPTMnetiP91128

Expressioni

Gene expression databases

BgeeiWBGene00004425

Interactioni

Protein-protein interaction databases

BioGridi37423, 1 interactor
DIPiDIP-25306N
STRINGi6239.C32E8.2a.1

Structurei

3D structure databases

ProteinModelPortaliP91128
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
GeneTreeiENSGT00390000007818
HOGENOMiHOG000170452
InParanoidiP91128
KOiK02873
OMAiIVVDHRR
OrthoDBiEOG091G0KGO
PhylomeDBiP91128

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform a (identifier: P91128-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAPRGNQMLG NAHFRKHWHK RIKTWFDQPA RKLRRRQNRQ AKAVEIAPRP
60 70 80 90 100
VAGLLRSVVR CPQKRYNTKT RLGRGFSLQE LKAAGISQAQ ARTIGIAVDV
110 120 130 140 150
RRTNKTAEGL KANADRLKEY KAKLILFPKK ASAPKKGDSS AEELKVAAQL
160 170 180 190 200
RGDVLPLSHT ITFDEPRQVT DAERKVEIFR LLRKERADKK YRGKREKRAR

EAAEENK
Note: No experimental confirmation available.
Length:207
Mass (Da):23,753
Last modified:May 1, 1997 - v1
Checksum:i5D22A55C0AC01C36
GO
Isoform b (identifier: P91128-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     85-203: Missing.

Note: No experimental confirmation available.
Show »
Length:88
Mass (Da):10,386
Checksum:i6F065BE8970E6767
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_02072685 – 203Missing in isoform b. CuratedAdd BLAST119

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080749 Genomic DNA Translation: CCD66399.1
FO080749 Genomic DNA Translation: CCD66400.1
PIRiT25599
RefSeqiNP_001021017.1, NM_001025846.3 [P91128-1]
UniGeneiCel.38570

Genome annotation databases

EnsemblMetazoaiC32E8.2a.1; C32E8.2a.1; WBGene00004425 [P91128-1]
C32E8.2a.2; C32E8.2a.2; WBGene00004425 [P91128-1]
GeneIDi171949
KEGGicel:CELE_C32E8.2
UCSCiC32E8.2a.1 c. elegans [P91128-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiRL13_CAEEL
AccessioniPrimary (citable) accession number: P91128
Secondary accession number(s): Q86GU2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: May 1, 1997
Last modified: May 23, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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