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UniProtKB - P87295 (PEP5L_SCHPO)

Entry version 125 (10 Feb 2021)
Sequence version 2 (21 Mar 2012)
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Protein

Pep5-like zinc finger protein C16A10.03c

Gene

SPAC16A10.03c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri780 – 814RING-type; atypicalAdd BLAST35

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pep5-like zinc finger protein C16A10.03c
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:SPAC16A10.03c
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

Organism-specific databases

Schizosaccharomyces pombe database

More...PomBasei		SPAC16A10.03c

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		FungiDB:SPAC16A10.03c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000559941 – 847Pep5-like zinc finger protein C16A10.03cAdd BLAST847

Proteomic databases

MaxQB - The MaxQuant DataBase

More...MaxQBi		P87295

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P87295

PRoteomics IDEntifications database

More...PRIDEi		P87295

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P87295

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		278774, 3 interactors

STRING: functional protein association networks

More...STRINGi		4896.SPAC16A10.03c.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati387 – 526CHCRAdd BLAST140

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri780 – 814RING-type; atypicalAdd BLAST35

Keywords - Domaini

Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2114, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_333219_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P87295

Identification of Orthologs from Complete Genome Data

More...OMAi		HRDCATE

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR000547, Clathrin_H-chain/VPS_repeat
IPR016528, VPS11
IPR036322, WD40_repeat_dom_sf
IPR001841, Znf_RING

The PANTHER Classification System

More...PANTHERi		PTHR23323:SF24, PTHR23323:SF24, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF17122, zf-C3H2C3, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50978, SSF50978, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50236, CHCR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P87295-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNINEWEKFS LFQWQECPSI KILHDSVGNK ISCIGKSTKR IAIGTLDGRI 
        60         70         80         90        100
VILNSRLQLI RDFYACEQGI VQQIYITADQ SALCCVVLDK QNFVYLQFWS 
       110        120        130        140        150
LNPSKKTNSN SPLCLYEHRL YGIPNPPFPA TSLYVSIDIK TVVCGFANGL 
       160        170        180        190        200
VIRVEGDFVR DLGSRQDIIL REKDSITNLI LYSPKKLFVS TTTQVMVYKI 
       210        220        230        240        250
KNNTKKVISN HGIPLFCSIQ YQGKYIMCAG GSFLSVYTTP DMQLQNTYCV 
       260        270        280        290        300
DGTFELLFSS FGLVFVVYTR KNGENGLENN SSIREIKALD VEKRYVLYES 
       310        320        330        340        350
LLEQSYDNIF FNSFDCIFFS STKVPCQLIR LPSDFVLCKM KGKKEHKDAF 
       360        370        380        390        400
KIANYLGSPE DTIRECALAA AGECRQQLNF QDATYYYIEA IPFSDSAEII 
       410        420        430        440        450
KFYLEKKLIK ELTSYLEALS AKGFAFSHEI STLIYLYIKL RKLDKLTEYV 
       460        470        480        490        500
SGCPTEISLP ILRKYKCLDQ MELLGTIRKL PNVCMEVYQE KGDVEKAFNH 
       510        520        530        540        550
LQVCNLPELL RTSNSFGIWL FNSDPMRFMK EAIRNIEILN SQGKDKELSN 
       560        570        580        590        600
ILKIVYLGIF SQNVQIQLIF LDELLKSKKS ENVLKFIYTR KLYALMQKEL 
       610        620        630        640        650
QHSNPQNELD ALQIIHDSQG LLDYESSILC LQAVSWKQVT DLLYSHLSLK 
       660        670        680        690        700
EGQDDSLIQQ IISDPETVKT LSETYSSEDA LHVLKFFVRE RSITNKYEDI 
       710        720        730        740        750
LYKILEACFM QFRIPIQHVL NILVKDGTLN FCFLKPLLLK WMNDYETRIH 
       760        770        780        790        800
QNDDEIQVIK NDIEKKRQLL GTIQDSEKVC DNCEGLLDVP FVSYSCLHLV 
       810        820        830        840 
HRDCATETVC PKCKAGYLDK KNSHDQKKTS TFSELFHDFE SIDSVML
Length:847
Mass (Da):97,486
Last modified:March 21, 2012 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE2D7C41540FD9BEE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB09996.4

Protein sequence database of the Protein Information Resource

More...PIRi		T37768

NCBI Reference Sequences

More...RefSeqi		NP_594043.2, NM_001019468.2

Genome annotation databases

Ensembl fungal genome annotation project

More...EnsemblFungii		SPAC16A10.03c.1; SPAC16A10.03c.1:pep; SPAC16A10.03c

Database of genes from NCBI RefSeq genomes

More...GeneIDi		2542307

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		spo:SPAC16A10.03c

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB09996.4
PIRiT37768
RefSeqiNP_594043.2, NM_001019468.2

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi278774, 3 interactors
STRINGi4896.SPAC16A10.03c.1

PTM databases

iPTMnetiP87295

Proteomic databases

MaxQBiP87295
PaxDbiP87295
PRIDEiP87295

Genome annotation databases

EnsemblFungiiSPAC16A10.03c.1; SPAC16A10.03c.1:pep; SPAC16A10.03c
GeneIDi2542307
KEGGispo:SPAC16A10.03c

Organism-specific databases

PomBaseiSPAC16A10.03c
VEuPathDBiFungiDB:SPAC16A10.03c

Phylogenomic databases

eggNOGiKOG2114, Eukaryota
HOGENOMiCLU_333219_0_0_1
InParanoidiP87295
OMAiHRDCATE

Miscellaneous databases

Protein Ontology

More...PROi		PR:P87295

Family and domain databases

InterProiView protein in InterPro
IPR000547, Clathrin_H-chain/VPS_repeat
IPR016528, VPS11
IPR036322, WD40_repeat_dom_sf
IPR001841, Znf_RING
PANTHERiPTHR23323:SF24, PTHR23323:SF24, 1 hit
PfamiView protein in Pfam
PF17122, zf-C3H2C3, 1 hit
SUPFAMiSSF50978, SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50236, CHCR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPEP5L_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P87295
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: March 21, 2012
Last modified: February 10, 2021
This is version 125 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
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