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Protein

Putative syntaxin 6

Gene

syx-6

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Potentially involved in docking of synaptic vesicles at presynaptic active zones.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processNeurotransmitter transport, Transport

Enzyme and pathway databases

ReactomeiR-CEL-6811438 Intra-Golgi traffic
R-CEL-6811440 Retrograde transport at the Trans-Golgi-Network

Names & Taxonomyi

Protein namesi
Recommended name:
Putative syntaxin 6
Gene namesi
Name:syx-6
ORF Names:C15C7.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiC15C7.1 ; CE30865 ; WBGene00015789 ; syx-6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 100CytoplasmicSequence analysisAdd BLAST100
Transmembranei101 – 121Helical; Anchor for type IV membrane proteinSequence analysisAdd BLAST21
Topological domaini122ExtracellularSequence analysis1

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002102431 – 122Putative syntaxin 6Add BLAST122

Proteomic databases

EPDiP83528
PaxDbiP83528
PeptideAtlasiP83528
PRIDEiP83528

Expressioni

Gene expression databases

BgeeiWBGene00015789

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi6239.C15C7.1.2

Structurei

3D structure databases

ProteinModelPortaliP83528
SMRiP83528
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 93t-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd BLAST63

Sequence similaritiesi

Belongs to the syntaxin family.Curated

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3202 Eukaryota
ENOG410ZZA3 LUCA
GeneTreeiENSGT00390000008991
InParanoidiP83528
KOiK08498
OMAiEMELNDY
OrthoDBiEOG091G0KE5
PhylomeDBiP83528

Family and domain databases

InterProiView protein in InterPro
IPR006012 Syntaxin/epimorphin_CS
IPR000727 T_SNARE_dom
PfamiView protein in Pfam
PF05739 SNARE, 1 hit
SMARTiView protein in SMART
SM00397 t_SNARE, 1 hit
PROSITEiView protein in PROSITE
PS00914 SYNTAXIN, 1 hit
PS50192 T_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

P83528-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNYRYSKLN EEEISLEDMP SSANQILTRQ EQIIQEQDDE LELVGNSVRT
60 70 80 90 100
LRGMSSMIGD ELDQQSTMLD DLGQEMEYSE TRLDTAMKKM AKLTHLEDES
110 120
SQCKMIMVLS ALLFFLVFVL LV
Length:122
Mass (Da):14,035
Last modified:June 1, 2003 - v1
Checksum:i7CDEABB18C6823B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080550 Genomic DNA Translation: CCD64586.1
RefSeqiNP_508544.2, NM_076143.5
UniGeneiCel.20664

Genome annotation databases

EnsemblMetazoaiC15C7.1; C15C7.1; WBGene00015789
GeneIDi259698
KEGGicel:CELE_C15C7.1
UCSCiC15C7.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiSTX6_CAEEL
AccessioniPrimary (citable) accession number: P83528
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2003
Last sequence update: June 1, 2003
Last modified: March 28, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

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