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Protein

Single-stranded DNA-binding protein 2

Gene

SSBP2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Single-stranded DNA-binding protein 2
Alternative name(s):
Sequence-specific single-stranded-DNA-binding protein 2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SSBP2
Synonyms:SSDP2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Eukaryotic Pathogen Database Resources

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EuPathDBi
HostDB:ENSG00000145687.15

Human Gene Nomenclature Database

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HGNCi
HGNC:15831 SSBP2

Online Mendelian Inheritance in Man (OMIM)

More...
MIMi
607389 gene

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_P81877

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...
DisGeNETi
23635

Open Targets

More...
OpenTargetsi
ENSG00000145687

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...
PharmGKBi
PA38046

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
SSBP2

Domain mapping of disease mutations (DMDM)

More...
DMDMi
27734570

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001238261 – 361Single-stranded DNA-binding protein 2Add BLAST361

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei6N6-acetyllysineBy similarity1
Modified residuei321PhosphoserineCombined sources1
Modified residuei333PhosphothreonineCombined sources1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
P81877

MaxQB - The MaxQuant DataBase

More...
MaxQBi
P81877

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P81877

PeptideAtlas

More...
PeptideAtlasi
P81877

PRoteomics IDEntifications database

More...
PRIDEi
P81877

ProteomicsDB human proteome resource

More...
ProteomicsDBi
57701

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P81877

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
P81877

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000145687 Expressed in 231 organ(s), highest expression level in neocortex

CleanEx database of gene expression profiles

More...
CleanExi
HS_SSBP2

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P81877 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P81877 HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
CAB020834
HPA068605

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
117164, 29 interactors

Database of interacting proteins

More...
DIPi
DIP-29459N

Protein interaction database and analysis system

More...
IntActi
P81877, 16 interactors

Molecular INTeraction database

More...
MINTi
P81877

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000322977

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
P81877

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini18 – 50LisHPROSITE-ProRule annotationAdd BLAST33

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi100 – 293Pro-richAdd BLAST194
Compositional biasi147 – 312Gly-richAdd BLAST166

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4594 Eukaryota
ENOG410XPQX LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000153929

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000037785

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG068487

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P81877

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P81877

TreeFam database of animal gene trees

More...
TreeFami
TF318961

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006594 LisH
IPR008116 SSDP_DNA-bd

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR01743 SSDNABINDING

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00667 LisH, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50896 LISH, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (5+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 5 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 5 described isoforms and 4 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P81877-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK
60 70 80 90 100
NITLGEPPGF LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP
110 120 130 140 150
SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQALGGVP
160 170 180 190 200
GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP PRGMVPLGPQ NYGGAMRPPL
210 220 230 240 250
NALGGPGMPG MNMGPGGGRP WPNPTNANSI PYSSASPGNY VGPPGGGGPP
260 270 280 290 300
GTPIMPSPAD STNSGDNMYT LMNAVPPGPN RPNFPMGPGS DGPMGGLGGM
310 320 330 340 350
ESHHMNGSLG SGDMDSISKN SPNNMSLSNQ PGTPRDDGEM GGNFLNPFQS
360
ESYSPSMTMS V
Length:361
Mass (Da):37,828
Last modified:January 10, 2003 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEC6F9B08EBFF673A
GO
Isoform 2 (identifier: P81877-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     95-124: Missing.
     320-352: Missing.

Note: No experimental confirmation available.
Show »
Length:298
Mass (Da):31,479
Checksum:iF04068F9E932A4EC
GO
Isoform 3 (identifier: P81877-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     124-143: Missing.

Show »
Length:341
Mass (Da):35,568
Checksum:i8EEFA5397A1A73EE
GO
Isoform 4 (identifier: P81877-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     95-124: Missing.

Note: No experimental confirmation available.
Show »
Length:331
Mass (Da):35,000
Checksum:i3496A6875143F773
GO
Isoform 5 (identifier: P81877-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     95-124: Missing.
     189-189: P → PQSDPWLSL

Note: No experimental confirmation available.
Show »
Length:339
Mass (Da):35,927
Checksum:i92CE7812DF6F65D8
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A087X159A0A087X159_HUMAN
Single-stranded DNA-binding protein...
SSBP2
369Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D6RAC5D6RAC5_HUMAN
Single-stranded DNA-binding protein...
SSBP2
208Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0Y9M5H0Y9M5_HUMAN
Single-stranded DNA-binding protein...
SSBP2
264Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0Y9V4H0Y9V4_HUMAN
Single-stranded DNA-binding protein...
SSBP2
275Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti23A → V in CR936787 (PubMed:17974005).Curated1
Sequence conflicti158S → R in CAB45699 (PubMed:11230166).Curated1
Sequence conflicti178 – 189MTPPR…VPLGP → NDSSKRNGCLRTTVLTPGLS L in AAD27781 (PubMed:10931946).CuratedAdd BLAST12
Sequence conflicti255M → V in BAH11905 (PubMed:14702039).Curated1
Sequence conflicti306N → D in BAC11046 (PubMed:14702039).Curated1
Sequence conflicti346N → S in BAH13151 (PubMed:14702039).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_04474495 – 124Missing in isoform 2, isoform 4 and isoform 5. 2 PublicationsAdd BLAST30
Alternative sequenceiVSP_045117124 – 143Missing in isoform 3. 1 PublicationAdd BLAST20
Alternative sequenceiVSP_045580189P → PQSDPWLSL in isoform 5. 1 Publication1
Alternative sequenceiVSP_044745320 – 352Missing in isoform 2. 1 PublicationAdd BLAST33

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY026275
, AY026259, AY026260, AY026261, AY026262, AY026263, AY026264, AY026265, AY026266, AY026267, AY026268, AY026269, AY026270, AY026271, AY026272, AY026273, AY026274 Genomic DNA Translation: AAK15803.1
AF077048 mRNA Translation: AAD27781.1
AL080076 mRNA Translation: CAB45699.1
AK074537 mRNA Translation: BAC11046.1
AK293544 mRNA Translation: BAH11528.1
AK294864 mRNA Translation: BAH11905.1
AK299858 mRNA Translation: BAH13151.1
AK312337 mRNA Translation: BAG35258.1
CR936787 mRNA No translation available.
AC010623 Genomic DNA No translation available.
AC016562 Genomic DNA No translation available.
AC026419 Genomic DNA No translation available.
AC093250 Genomic DNA No translation available.
CH471084 Genomic DNA Translation: EAW95879.1
BC017020 mRNA Translation: AAH17020.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS4056.1 [P81877-1]
CCDS58960.1 [P81877-2]
CCDS58961.1 [P81877-4]
CCDS58962.1 [P81877-5]
CCDS58963.1 [P81877-3]

Protein sequence database of the Protein Information Resource

More...
PIRi
T12470

NCBI Reference Sequences

More...
RefSeqi
NP_001243661.1, NM_001256732.2
NP_001243662.1, NM_001256733.2 [P81877-3]
NP_001243663.1, NM_001256734.2 [P81877-5]
NP_001243664.1, NM_001256735.2 [P81877-4]
NP_001243665.1, NM_001256736.2 [P81877-2]
NP_036578.2, NM_012446.4 [P81877-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Hs.102735

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000320672; ENSP00000322977; ENSG00000145687 [P81877-1]
ENST00000505980; ENSP00000423969; ENSG00000145687 [P81877-3]
ENST00000509053; ENSP00000422961; ENSG00000145687 [P81877-2]
ENST00000514493; ENSP00000426183; ENSG00000145687 [P81877-4]
ENST00000515395; ENSP00000424657; ENSG00000145687 [P81877-5]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
23635

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:23635

UCSC genome browser

More...
UCSCi
uc003kho.5 human [P81877-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY026275
, AY026259, AY026260, AY026261, AY026262, AY026263, AY026264, AY026265, AY026266, AY026267, AY026268, AY026269, AY026270, AY026271, AY026272, AY026273, AY026274 Genomic DNA Translation: AAK15803.1
AF077048 mRNA Translation: AAD27781.1
AL080076 mRNA Translation: CAB45699.1
AK074537 mRNA Translation: BAC11046.1
AK293544 mRNA Translation: BAH11528.1
AK294864 mRNA Translation: BAH11905.1
AK299858 mRNA Translation: BAH13151.1
AK312337 mRNA Translation: BAG35258.1
CR936787 mRNA No translation available.
AC010623 Genomic DNA No translation available.
AC016562 Genomic DNA No translation available.
AC026419 Genomic DNA No translation available.
AC093250 Genomic DNA No translation available.
CH471084 Genomic DNA Translation: EAW95879.1
BC017020 mRNA Translation: AAH17020.1
CCDSiCCDS4056.1 [P81877-1]
CCDS58960.1 [P81877-2]
CCDS58961.1 [P81877-4]
CCDS58962.1 [P81877-5]
CCDS58963.1 [P81877-3]
PIRiT12470
RefSeqiNP_001243661.1, NM_001256732.2
NP_001243662.1, NM_001256733.2 [P81877-3]
NP_001243663.1, NM_001256734.2 [P81877-5]
NP_001243664.1, NM_001256735.2 [P81877-4]
NP_001243665.1, NM_001256736.2 [P81877-2]
NP_036578.2, NM_012446.4 [P81877-1]
UniGeneiHs.102735

3D structure databases

ProteinModelPortaliP81877
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi117164, 29 interactors
DIPiDIP-29459N
IntActiP81877, 16 interactors
MINTiP81877
STRINGi9606.ENSP00000322977

PTM databases

iPTMnetiP81877
PhosphoSitePlusiP81877

Polymorphism and mutation databases

BioMutaiSSBP2
DMDMi27734570

Proteomic databases

EPDiP81877
MaxQBiP81877
PaxDbiP81877
PeptideAtlasiP81877
PRIDEiP81877
ProteomicsDBi57701

Protocols and materials databases

The DNASU plasmid repository

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DNASUi
23635
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000320672; ENSP00000322977; ENSG00000145687 [P81877-1]
ENST00000505980; ENSP00000423969; ENSG00000145687 [P81877-3]
ENST00000509053; ENSP00000422961; ENSG00000145687 [P81877-2]
ENST00000514493; ENSP00000426183; ENSG00000145687 [P81877-4]
ENST00000515395; ENSP00000424657; ENSG00000145687 [P81877-5]
GeneIDi23635
KEGGihsa:23635
UCSCiuc003kho.5 human [P81877-1]

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
23635
DisGeNETi23635
EuPathDBiHostDB:ENSG00000145687.15

GeneCards: human genes, protein and diseases

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GeneCardsi
SSBP2
HGNCiHGNC:15831 SSBP2
HPAiCAB020834
HPA068605
MIMi607389 gene
neXtProtiNX_P81877
OpenTargetsiENSG00000145687
PharmGKBiPA38046

GenAtlas: human gene database

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GenAtlasi
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Phylogenomic databases

eggNOGiKOG4594 Eukaryota
ENOG410XPQX LUCA
GeneTreeiENSGT00940000153929
HOGENOMiHOG000037785
HOVERGENiHBG068487
InParanoidiP81877
PhylomeDBiP81877
TreeFamiTF318961

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
SSBP2 human

The Gene Wiki collection of pages on human genes and proteins

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GeneWikii
SSBP2

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

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GenomeRNAii
23635

Protein Ontology

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PROi
PR:P81877

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSG00000145687 Expressed in 231 organ(s), highest expression level in neocortex
CleanExiHS_SSBP2
ExpressionAtlasiP81877 baseline and differential
GenevisibleiP81877 HS

Family and domain databases

InterProiView protein in InterPro
IPR006594 LisH
IPR008116 SSDP_DNA-bd
PRINTSiPR01743 SSDNABINDING
SMARTiView protein in SMART
SM00667 LisH, 1 hit
PROSITEiView protein in PROSITE
PS50896 LISH, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSSBP2_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P81877
Secondary accession number(s): B2R5W1
, B7Z1J2, B7Z2L9, B7Z665, D6RH18, E9PB74, E9PDA8, Q8N2Q2, Q9BWW6, Q9Y4T7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2003
Last sequence update: January 10, 2003
Last modified: December 5, 2018
This is version 153 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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