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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the bottom of the body of the 30S subunit, by binding to several RNA helices of the 16S rRNA.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1402-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20
Gene namesi
Name:rpsT
Synonyms:rps20
Ordered Locus Names:TTHA1397
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001680502 – 10630S ribosomal protein S20Add BLAST105

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1397

Structurei

Secondary structure

1106
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP80380
SMRiP80380
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80380

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108AH5 Bacteria
COG0268 LUCA
HOGENOMiHOG000097049
KOiK02968
OMAiANKKSAM
PhylomeDBiP80380

Family and domain databases

Gene3Di1.20.58.110, 1 hit
HAMAPiMF_00500 Ribosomal_S20, 1 hit
InterProiView protein in InterPro
IPR002583 Ribosomal_S20
IPR036510 Ribosomal_S20_sf
PANTHERiPTHR33398 PTHR33398, 1 hit
PfamiView protein in Pfam
PF01649 Ribosomal_S20p, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004231 Ribosomal_S20, 1 hit
SUPFAMiSSF46992 SSF46992, 1 hit
TIGRFAMsiTIGR00029 S20, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80380-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQKKPKRNL SALKRHRQSL KRRLRNKAKK SAIKTLSKKA IQLAQEGKAE
60 70 80 90 100
EALKIMRKAE SLIDKAAKGS TLHKNAAARR KSRLMRKVRQ LLEAAGAPLI

GGGLSA
Length:106
Mass (Da):11,703
Last modified:January 23, 2007 - v3
Checksum:iBEFD49F34F71F5E8
GO

Mass spectrometryi

Molecular mass is 11572 Da from positions 2 - 106. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ295159 Genomic DNA Translation: CAC15067.1
AP008226 Genomic DNA Translation: BAD71220.1
RefSeqiWP_011228650.1, NC_006461.1
YP_144663.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71220; BAD71220; BAD71220
GeneIDi3168087
KEGGittj:TTHA1397
PATRICifig|300852.9.peg.1371

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ295159 Genomic DNA Translation: CAC15067.1
AP008226 Genomic DNA Translation: BAD71220.1
RefSeqiWP_011228650.1, NC_006461.1
YP_144663.1, NC_006461.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00T1-106[»]
1HNWX-ray3.40T1-106[»]
1HNXX-ray3.40T1-106[»]
1HNZX-ray3.30T1-106[»]
1HR0X-ray3.20T1-106[»]
1I94X-ray3.20T2-106[»]
1I95X-ray4.50T2-106[»]
1I96X-ray4.20T2-106[»]
1I97X-ray4.50T2-106[»]
1IBKX-ray3.31T1-106[»]
1IBLX-ray3.11T1-106[»]
1IBMX-ray3.31T1-106[»]
1J5EX-ray3.05T1-106[»]
1JGOX-ray5.60W1-106[»]
1JGPX-ray7.00W1-106[»]
1JGQX-ray5.00W1-106[»]
1L1Umodel-T8-106[»]
1ML5electron microscopy14.00W1-106[»]
1N32X-ray3.00T1-106[»]
1N33X-ray3.35T1-106[»]
1N34X-ray3.80T1-106[»]
1N36X-ray3.65T1-106[»]
1VVJX-ray3.44QT/XT1-106[»]
1VY4X-ray2.60AT/CT1-106[»]
1VY5X-ray2.55AT/CT1-106[»]
1VY6X-ray2.90AT/CT1-106[»]
1VY7X-ray2.80AT/CT1-106[»]
1XMOX-ray3.25T1-106[»]
1XMQX-ray3.00T1-106[»]
1XNQX-ray3.05T1-106[»]
1XNRX-ray3.10T1-106[»]
2E5LX-ray3.30T2-106[»]
2F4VX-ray3.80T1-106[»]
2HHHX-ray3.35T1-106[»]
2UU9X-ray3.10T2-106[»]
2UUAX-ray2.90T2-106[»]
2UUBX-ray2.80T2-106[»]
2UUCX-ray3.10T2-106[»]
2ZM6X-ray3.30T2-106[»]
3OTOX-ray3.69T1-106[»]
4AQYX-ray3.50T1-106[»]
4B3MX-ray2.90T1-106[»]
4B3RX-ray3.00T1-106[»]
4B3SX-ray3.15T1-106[»]
4B3TX-ray3.00T1-106[»]
4DR1X-ray3.60T1-106[»]
4DR2X-ray3.25T1-106[»]
4DR3X-ray3.35T1-106[»]
4DR4X-ray3.97T1-106[»]
4DR5X-ray3.45T1-106[»]
4DR6X-ray3.30T1-106[»]
4DR7X-ray3.75T1-106[»]
4DUYX-ray3.39T1-106[»]
4DUZX-ray3.65T1-106[»]
4DV0X-ray3.85T1-106[»]
4DV1X-ray3.85T1-106[»]
4DV2X-ray3.65T1-106[»]
4DV3X-ray3.55T1-106[»]
4DV4X-ray3.65T1-106[»]
4DV5X-ray3.68T1-106[»]
4DV6X-ray3.30T1-106[»]
4DV7X-ray3.29T1-106[»]
4GKJX-ray3.30T8-106[»]
4GKKX-ray3.20T8-106[»]
4JI0X-ray3.49T1-106[»]
4JI1X-ray3.14T1-106[»]
4JI2X-ray3.64T1-106[»]
4JI3X-ray3.35T1-106[»]
4JI4X-ray3.69T1-106[»]
4JI5X-ray3.85T1-106[»]
4JI6X-ray3.55T1-106[»]
4JI7X-ray3.50T1-106[»]
4JI8X-ray3.74T1-106[»]
4JV5X-ray3.16T8-106[»]
4JYAX-ray3.10T8-106[»]
4K0KX-ray3.40T8-106[»]
4KHPX-ray3.10T8-106[»]
4L47X-ray3.22QT/XT1-106[»]
4L71X-ray3.90QT/XT1-106[»]
4LELX-ray3.90QT/XT1-106[»]
4LF4X-ray3.34T1-106[»]
4LF5X-ray3.75T1-106[»]
4LF6X-ray3.31T1-106[»]
4LF7X-ray3.15T1-106[»]
4LF8X-ray3.15T1-106[»]
4LF9X-ray3.28T1-106[»]
4LFAX-ray3.65T1-106[»]
4LFBX-ray3.01T1-106[»]
4LFCX-ray3.60T1-106[»]
4LFZX-ray3.92QT/XT1-106[»]
4LNTX-ray2.94QT/XT1-106[»]
4LSKX-ray3.48QT/XT1-106[»]
4LT8X-ray3.14QT/XT1-106[»]
4NXMX-ray3.65T1-106[»]
4NXNX-ray3.54T1-106[»]
4OX9X-ray3.80T1-106[»]
4P6FX-ray3.60QT/XT1-106[»]
4P70X-ray3.68QT/XT1-106[»]
4TUAX-ray3.60QT/XT1-106[»]
4TUBX-ray3.60QT/XT1-106[»]
4TUCX-ray3.60QT/XT1-106[»]
4TUDX-ray3.60QT/XT1-106[»]
4TUEX-ray3.50QT/XT1-106[»]
4V42X-ray5.50W1-106[»]
4V49X-ray8.70T8-106[»]
4V4AX-ray9.50T8-106[»]
4V4IX-ray3.71u1-106[»]
4V4PX-ray5.50BW1-106[»]
4V4RX-ray5.90AT1-106[»]
4V4SX-ray6.76AT1-106[»]
4V4TX-ray6.46AT1-106[»]
4V4XX-ray5.00AW1-106[»]
4V4YX-ray5.50AW1-106[»]
4V4ZX-ray4.51AW1-106[»]
4V51X-ray2.80AT/CT2-106[»]
4V5AX-ray3.50AT/CT2-106[»]
4V5CX-ray3.30AT/CT1-106[»]
4V5DX-ray3.50AT/CT1-106[»]
4V5EX-ray3.45AT/CT1-106[»]
4V5FX-ray3.60AT/CT1-106[»]
4V5GX-ray3.60AT/CT1-106[»]
4V5JX-ray3.10AT/CT1-106[»]
4V5KX-ray3.20AT/CT1-106[»]
4V5LX-ray3.10AT1-106[»]
4V5Melectron microscopy7.80AT1-106[»]
4V5Nelectron microscopy7.60AT1-106[»]
4V5PX-ray3.10AT/CT1-106[»]
4V5QX-ray3.10AT/CT1-106[»]
4V5RX-ray3.10AT/CT1-106[»]
4V5SX-ray3.10AT/CT1-106[»]
4V68electron microscopy6.40AT8-106[»]
4V6AX-ray3.10AT/CT1-106[»]
4V6FX-ray3.10BW/CW1-106[»]
4V6GX-ray3.50AW/CW1-106[»]
4V7JX-ray3.30At/Bt1-106[»]
4V7KX-ray3.60At/Bt1-106[»]
4V7LX-ray3.00AT/CT1-106[»]
4V7MX-ray3.45AT/CT1-106[»]
4V7WX-ray3.00AT/CT1-106[»]
4V7XX-ray3.00AT/CT1-106[»]
4V7YX-ray3.00AT/CT1-106[»]
4V7ZX-ray3.10AT/CT1-106[»]
4V87X-ray3.10BW/CW1-106[»]
4V8AX-ray3.20CT/DT1-106[»]
4V8BX-ray3.00AW/CW1-106[»]
4V8CX-ray3.30CW/DW1-106[»]
4V8DX-ray3.00AW/CW1-106[»]
4V8EX-ray3.30BW/DW1-106[»]
4V8FX-ray3.30BW/CW1-106[»]
4V8GX-ray3.00AT/CT1-106[»]
4V8HX-ray3.10AT/CT1-106[»]
4V8IX-ray2.70AT/CT1-106[»]
4V8JX-ray3.90AT/CT1-106[»]
4V8NX-ray3.10AT/CT1-106[»]
4V8OX-ray3.80AT1-106[»]
4V8QX-ray3.10BT1-106[»]
4V8UX-ray3.70AT/CT1-106[»]
4V8XX-ray3.35AT/CT1-106[»]
4V90X-ray2.95AT1-106[»]
4V95X-ray3.20AT/CT1-106[»]
4V97X-ray3.52AT/CT1-106[»]
4V9AX-ray3.30AW/CW1-106[»]
4V9BX-ray3.10AW/CW1-106[»]
4V9HX-ray2.86AT8-106[»]
4V9IX-ray3.30AT/CT8-106[»]
4V9RX-ray3.00AT/CT1-106[»]
4V9SX-ray3.10AT/CT1-106[»]
4W2EX-ray2.90t1-106[»]
4W2FX-ray2.40AT/CT1-106[»]
4W2GX-ray2.55AT/CT1-106[»]
4W2HX-ray2.70AT/CT1-106[»]
4W2IX-ray2.70AT/CT1-106[»]
4W4GX-ray3.30QT/XT1-106[»]
4WPOX-ray2.80BT/DT1-106[»]
4WQ1X-ray3.10BA/BI1-106[»]
4WQFX-ray2.80BT/DT1-106[»]
4WQRX-ray3.15BA/BI1-106[»]
4WQUX-ray2.80BT/DT1-106[»]
4WQYX-ray2.80BT/DT1-106[»]
4WR6X-ray3.05BA/BI1-106[»]
4WRAX-ray3.05BA/BI1-106[»]
4WROX-ray3.05BI1-106[»]
4WSDX-ray2.95BA/BI1-106[»]
4WSMX-ray3.30BA/BI1-106[»]
4WT1X-ray3.05BA/BI1-106[»]
4WT8X-ray3.40AU/BU8-106[»]
4WU1X-ray3.20BA/BI1-106[»]
4WZDX-ray3.10BA/BI1-106[»]
4WZOX-ray3.30BA/BI1-106[»]
4X62X-ray3.45T8-106[»]
4X64X-ray3.35T8-106[»]
4X65X-ray3.35T8-106[»]
4X66X-ray3.45T8-106[»]
4Y4OX-ray2.301t/2t1-106[»]
4Y4PX-ray2.501t/2t1-106[»]
4YHHX-ray3.42T8-106[»]
4YPBX-ray3.40QT/XT1-106[»]
4YY3X-ray3.60T1-106[»]
4YZVX-ray3.10QT/XT1-106[»]
4Z3SX-ray2.651t/2t1-106[»]
4Z8CX-ray2.901t/2t1-106[»]
4ZERX-ray3.101t/2t6-103[»]
4ZSNX-ray3.60QT/XT1-106[»]
5A9Zelectron microscopy4.70BX8-106[»]
5AA0electron microscopy5.00BX8-106[»]
5BR8X-ray3.40T1-106[»]
5CZPX-ray3.30QT/XT1-106[»]
5D8BX-ray3.63QC/UA1-106[»]
5DFEX-ray3.10QT/XT1-106[»]
5DOXX-ray3.101t/2t1-106[»]
5DOYX-ray2.601t/2t1-106[»]
5E7KX-ray3.20BA/BI1-106[»]
5E81X-ray2.95BA/BI1-106[»]
5EL4X-ray3.15BA/BI1-106[»]
5EL5X-ray3.15BA/BI1-106[»]
5EL6X-ray3.10BA/BI1-106[»]
5EL7X-ray3.15BA/BI1-106[»]
5F8KX-ray2.801t/2t6-103[»]
5FDUX-ray2.901t/2t6-103[»]
5FDVX-ray2.801t/2t6-103[»]
5HAUX-ray3.001t/2t1-106[»]
5HCPX-ray2.891t/2t1-106[»]
5HCQX-ray2.801t/2t1-106[»]
5HCRX-ray2.801t/2t1-106[»]
5HD1X-ray2.701t/2t1-106[»]
5IB7X-ray2.99BA/BI1-106[»]
5IB8X-ray3.13BA/BI1-106[»]
5IBBX-ray2.96BA/BI1-106[»]
5IMQelectron microscopy3.80X1-106[»]
5IMRelectron microscopy-X1-106[»]
5IWAX-ray3.50T4-106[»]
5J30X-ray3.20QT/XT1-106[»]
5J3CX-ray3.04QT/XT1-106[»]
5J4BX-ray2.601t/2t1-106[»]
5J4CX-ray2.801t/2t1-106[»]
5J8BX-ray2.60t1-106[»]
5LMNelectron microscopy3.55T1-106[»]
5LMOelectron microscopy4.30T1-106[»]
5LMPelectron microscopy5.35T1-106[»]
5LMQelectron microscopy4.20T1-106[»]
5LMRelectron microscopy4.45T1-106[»]
5LMSelectron microscopy5.10T1-106[»]
5LMTelectron microscopy4.15T1-106[»]
5LMUelectron microscopy4.00T1-106[»]
5LMVelectron microscopy4.90T1-106[»]
5NDJX-ray3.15BA/BI1-106[»]
5NDKX-ray2.95BA/BI1-106[»]
5OT7electron microscopy3.80S8-106[»]
5UQ7electron microscopy3.50t6-103[»]
5UQ8electron microscopy3.20t6-103[»]
5VP2X-ray2.801t/2t1-106[»]
5VPOX-ray3.34QT/XT1-106[»]
5VPPX-ray3.90QT/XT1-106[»]
5W4KX-ray2.701t/2t1-106[»]
5WISX-ray2.701t/2t1-106[»]
5WITX-ray2.601t/2t1-106[»]
5WNPX-ray3.30T8-106[»]
5WNQX-ray3.50T8-106[»]
5WNRX-ray3.50T8-106[»]
5WNSX-ray3.50T8-106[»]
5WNTX-ray3.30T8-106[»]
5WNUX-ray3.40T8-106[»]
5WNVX-ray3.30T8-106[»]
5ZLUelectron microscopy3.60C1-106[»]
6C5LX-ray3.20AT/CT1-106[»]
6CAEX-ray2.601t/2t1-106[»]
6CAOX-ray3.45T8-106[»]
6CAPX-ray3.40T8-106[»]
6CAQX-ray3.40T8-106[»]
6CARX-ray3.40T2-106[»]
6CASX-ray3.50T2-106[»]
6CFJX-ray2.801t/2t1-106[»]
6CFKX-ray2.701t/2t1-106[»]
6CFLX-ray2.601t/2t1-106[»]
6FKRX-ray3.201t/2t8-103[»]
6GSJX-ray2.96BA/BI1-106[»]
6GSKX-ray3.36BA/BI1-106[»]
6GSLX-ray3.16BA/BI1-106[»]
ProteinModelPortaliP80380
SMRiP80380
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1397

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71220; BAD71220; BAD71220
GeneIDi3168087
KEGGittj:TTHA1397
PATRICifig|300852.9.peg.1371

Phylogenomic databases

eggNOGiENOG4108AH5 Bacteria
COG0268 LUCA
HOGENOMiHOG000097049
KOiK02968
OMAiANKKSAM
PhylomeDBiP80380

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1402-MONOMER

Miscellaneous databases

EvolutionaryTraceiP80380

Family and domain databases

Gene3Di1.20.58.110, 1 hit
HAMAPiMF_00500 Ribosomal_S20, 1 hit
InterProiView protein in InterPro
IPR002583 Ribosomal_S20
IPR036510 Ribosomal_S20_sf
PANTHERiPTHR33398 PTHR33398, 1 hit
PfamiView protein in Pfam
PF01649 Ribosomal_S20p, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004231 Ribosomal_S20, 1 hit
SUPFAMiSSF46992 SSF46992, 1 hit
TIGRFAMsiTIGR00029 S20, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRS20_THET8
AccessioniPrimary (citable) accession number: P80380
Secondary accession number(s): Q5SIH2, Q9F2A9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: November 7, 2018
This is version 168 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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