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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome structure it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the top of the two subunits; these bridges are in contact with the A site and P site tRNAs respectively and are implicated in movement during ribosome translocation. Separately contacts the tRNAs in the A and P sites.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1673-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13
Gene namesi
Name:rpsM
Synonyms:rps13
Ordered Locus Names:TTHA1667
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001321602 – 12630S ribosomal protein S13Add BLAST125

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome, contacting protein L5 and the 23S rRNA; these bridges are straddled by the 5S rRNA.

Protein-protein interaction databases

STRINGi300852.TTHA1667

Structurei

Secondary structure

1126
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP80377
SMRiP80377
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80377

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108Z04 Bacteria
COG0099 LUCA
HOGENOMiHOG000039879
KOiK02952
OMAiRTKNNSR
PhylomeDBiP80377

Family and domain databases

Gene3Di4.10.910.10, 1 hit
HAMAPiMF_01315 Ribosomal_S13_S18, 1 hit
InterProiView protein in InterPro
IPR027437 30s_Rbsml_prot_S13_C
IPR001892 Ribosomal_S13
IPR010979 Ribosomal_S13-like_H2TH
IPR019980 Ribosomal_S13_bac-type
IPR018269 Ribosomal_S13_CS
PANTHERiPTHR10871:SF1 PTHR10871:SF1, 1 hit
PfamiView protein in Pfam
PF00416 Ribosomal_S13, 1 hit
PIRSFiPIRSF002134 Ribosomal_S13, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
TIGRFAMsiTIGR03631 uS13_bact, 1 hit
PROSITEiView protein in PROSITE
PS00646 RIBOSOMAL_S13_1, 1 hit
PS50159 RIBOSOMAL_S13_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80377-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE
60 70 80 90 100
AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG
110 120
QRTRTNARTR KGPRKTVAGK KKAPRK
Length:126
Mass (Da):14,305
Last modified:January 23, 2007 - v3
Checksum:iC20831747B312415
GO

Mass spectrometryi

Molecular mass is 14174 Da from positions 2 - 126. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA Translation: BAA75546.1
AP008226 Genomic DNA Translation: BAD71490.1
RefSeqiWP_008633368.1, NC_006461.1
YP_144933.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71490; BAD71490; BAD71490
GeneIDi3167962
KEGGittj:TTHA1667
PATRICifig|300852.9.peg.1637

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA Translation: BAA75546.1
AP008226 Genomic DNA Translation: BAD71490.1
RefSeqiWP_008633368.1, NC_006461.1
YP_144933.1, NC_006461.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00M1-126[»]
1HNWX-ray3.40M1-126[»]
1HNXX-ray3.40M1-126[»]
1HNZX-ray3.30M1-126[»]
1HR0X-ray3.20M1-126[»]
1I94X-ray3.20M2-126[»]
1I95X-ray4.50M2-126[»]
1I96X-ray4.20M2-126[»]
1I97X-ray4.50M2-126[»]
1IBKX-ray3.31M1-126[»]
1IBLX-ray3.11M1-126[»]
1IBMX-ray3.31M1-126[»]
1J5EX-ray3.05M1-126[»]
1JGOX-ray5.60P1-126[»]
1JGPX-ray7.00P1-126[»]
1JGQX-ray5.00P1-126[»]
1L1Umodel-M1-126[»]
1MJ1electron microscopy13.00P1-126[»]
1ML5electron microscopy14.00P1-126[»]
1N32X-ray3.00M1-126[»]
1N33X-ray3.35M1-126[»]
1N34X-ray3.80M1-126[»]
1N36X-ray3.65M1-126[»]
1VVJX-ray3.44QM/XM1-126[»]
1VY4X-ray2.60AM/CM1-126[»]
1VY5X-ray2.55AM/CM1-126[»]
1VY6X-ray2.90AM/CM1-126[»]
1VY7X-ray2.80AM/CM1-126[»]
1XMOX-ray3.25M1-126[»]
1XMQX-ray3.00M1-126[»]
1XNQX-ray3.05M1-126[»]
1XNRX-ray3.10M1-126[»]
2E5LX-ray3.30M2-126[»]
2F4VX-ray3.80M1-126[»]
2HHHX-ray3.35M1-126[»]
2UU9X-ray3.10M2-126[»]
2UUAX-ray2.90M2-126[»]
2UUBX-ray2.80M2-126[»]
2UUCX-ray3.10M2-126[»]
2UXBX-ray3.10M2-126[»]
2UXCX-ray2.90M2-126[»]
2UXDX-ray3.20M2-126[»]
2VQEX-ray2.50M1-126[»]
2VQFX-ray2.90M1-126[»]
2ZM6X-ray3.30M2-126[»]
3OTOX-ray3.69M1-126[»]
3T1HX-ray3.11M1-126[»]
3T1YX-ray2.80M1-126[»]
4AQYX-ray3.50M1-126[»]
4B3MX-ray2.90M1-126[»]
4B3RX-ray3.00M1-126[»]
4B3SX-ray3.15M1-126[»]
4B3TX-ray3.00M1-126[»]
4DR1X-ray3.60M1-126[»]
4DR2X-ray3.25M1-126[»]
4DR3X-ray3.35M1-126[»]
4DR4X-ray3.97M1-126[»]
4DR5X-ray3.45M1-126[»]
4DR6X-ray3.30M1-126[»]
4DR7X-ray3.75M1-126[»]
4DUYX-ray3.39M1-126[»]
4DUZX-ray3.65M1-126[»]
4DV0X-ray3.85M1-126[»]
4DV1X-ray3.85M1-126[»]
4DV2X-ray3.65M1-126[»]
4DV3X-ray3.55M1-126[»]
4DV4X-ray3.65M1-126[»]
4DV5X-ray3.68M1-126[»]
4DV6X-ray3.30M1-126[»]
4DV7X-ray3.29M1-126[»]
4GKJX-ray3.30M2-126[»]
4GKKX-ray3.20M2-126[»]
4JI0X-ray3.49M1-126[»]
4JI1X-ray3.14M1-126[»]
4JI2X-ray3.64M1-126[»]
4JI3X-ray3.35M1-126[»]
4JI4X-ray3.69M1-126[»]
4JI5X-ray3.85M1-126[»]
4JI6X-ray3.55M1-126[»]
4JI7X-ray3.50M1-126[»]
4JI8X-ray3.74M1-126[»]
4JV5X-ray3.16M2-121[»]
4JYAX-ray3.10M2-121[»]
4K0KX-ray3.40M2-122[»]
4KHPX-ray3.10M2-121[»]
4L47X-ray3.22QM/XM1-126[»]
4L71X-ray3.90QM/XM1-126[»]
4LELX-ray3.90QM/XM1-126[»]
4LF4X-ray3.34M1-126[»]
4LF5X-ray3.75M1-126[»]
4LF6X-ray3.31M1-126[»]
4LF7X-ray3.15M1-126[»]
4LF8X-ray3.15M1-126[»]
4LF9X-ray3.28M1-126[»]
4LFAX-ray3.65M1-126[»]
4LFBX-ray3.01M1-126[»]
4LFCX-ray3.60M1-126[»]
4LFZX-ray3.92QM/XM1-126[»]
4LNTX-ray2.94QM/XM1-126[»]
4LSKX-ray3.48QM/XM1-126[»]
4LT8X-ray3.14QM/XM1-126[»]
4NXMX-ray3.65M1-126[»]
4NXNX-ray3.54M1-126[»]
4OX9X-ray3.80M1-126[»]
4P6FX-ray3.60QM/XM1-126[»]
4P70X-ray3.68QM/XM1-126[»]
4TUAX-ray3.60QM/XM1-126[»]
4TUBX-ray3.60QM/XM1-126[»]
4TUCX-ray3.60QM/XM1-126[»]
4TUDX-ray3.60QM/XM1-126[»]
4TUEX-ray3.50QM/XM1-126[»]
4V42X-ray5.50AP1-126[»]
4V49X-ray8.70M2-126[»]
4V4AX-ray9.50M2-126[»]
4V4IX-ray3.71n-[»]
4V4PX-ray5.50BP1-126[»]
4V4RX-ray5.90AM1-126[»]
4V4SX-ray6.76AM1-126[»]
4V4TX-ray6.46AM1-126[»]
4V4XX-ray5.00AP1-126[»]
4V4YX-ray5.50AP1-126[»]
4V4ZX-ray4.51AP1-126[»]
4V51X-ray2.80AM/CM2-126[»]
4V5AX-ray3.50AM/CM2-126[»]
4V5CX-ray3.30AM/CM1-126[»]
4V5DX-ray3.50AM/CM1-126[»]
4V5EX-ray3.45AM/CM1-126[»]
4V5FX-ray3.60AM/CM1-126[»]
4V5GX-ray3.60AM/CM1-126[»]
4V5JX-ray3.10AM/CM1-126[»]
4V5KX-ray3.20AM/CM1-126[»]
4V5LX-ray3.10AM1-126[»]
4V5Melectron microscopy7.80AM1-126[»]
4V5Nelectron microscopy7.60AM1-126[»]
4V5PX-ray3.10AM/CM1-126[»]
4V5QX-ray3.10AM/CM1-126[»]
4V5RX-ray3.10AM/CM1-126[»]
4V5SX-ray3.10AM/CM1-126[»]
4V68electron microscopy6.40AM2-126[»]
4V6AX-ray3.10AM/CM1-126[»]
4V6FX-ray3.10BP/CP1-126[»]
4V6GX-ray3.50AP/CP1-126[»]
4V7JX-ray3.30Am/Bm1-126[»]
4V7KX-ray3.60Am/Bm1-126[»]
4V7LX-ray3.00AM/CM1-126[»]
4V7MX-ray3.45AM/CM1-126[»]
4V7WX-ray3.00AM/CM1-126[»]
4V7XX-ray3.00AM/CM1-126[»]
4V7YX-ray3.00AM/CM1-126[»]
4V7ZX-ray3.10AM/CM1-126[»]
4V87X-ray3.10BP/CP1-126[»]
4V8AX-ray3.20CM/DM1-126[»]
4V8BX-ray3.00AP/CP1-126[»]
4V8CX-ray3.30CP/DP1-126[»]
4V8DX-ray3.00AP/CP1-126[»]
4V8EX-ray3.30BP/DP1-126[»]
4V8FX-ray3.30BP/CP1-126[»]
4V8GX-ray3.00AM/CM1-126[»]
4V8HX-ray3.10AM/CM1-126[»]
4V8IX-ray2.70AM/CM1-126[»]
4V8JX-ray3.90AM/CM1-126[»]
4V8NX-ray3.10AM/CM1-126[»]
4V8OX-ray3.80AM1-126[»]
4V8QX-ray3.10BM1-126[»]
4V8UX-ray3.70AM/CM1-126[»]
4V8XX-ray3.35AM/CM1-126[»]
4V90X-ray2.95AM1-126[»]
4V95X-ray3.20AM/CM1-126[»]
4V97X-ray3.52AM/CM1-126[»]
4V9AX-ray3.30AP/CP1-126[»]
4V9BX-ray3.10AP/CP1-126[»]
4V9HX-ray2.86AM2-125[»]
4V9IX-ray3.30AM/CM2-125[»]
4V9RX-ray3.00AM/CM1-126[»]
4V9SX-ray3.10AM/CM1-126[»]
4W2EX-ray2.90m1-126[»]
4W2FX-ray2.40AM/CM1-126[»]
4W2GX-ray2.55AM/CM1-126[»]
4W2HX-ray2.70AM/CM1-126[»]
4W2IX-ray2.70AM/CM1-126[»]
4W4GX-ray3.30QM/XM1-126[»]
4WPOX-ray2.80BM/DM1-126[»]
4WQ1X-ray3.104A/4I1-126[»]
4WQFX-ray2.80BM/DM1-126[»]
4WQRX-ray3.154A/4I1-126[»]
4WQUX-ray2.80BM/DM1-126[»]
4WQYX-ray2.80BM/DM1-126[»]
4WR6X-ray3.054A/4I1-126[»]
4WRAX-ray3.054A/4I1-126[»]
4WROX-ray3.054I1-126[»]
4WSDX-ray2.954A/4I1-126[»]
4WSMX-ray3.304A/4I1-126[»]
4WT1X-ray3.054A/4I1-126[»]
4WT8X-ray3.40AM/BM2-125[»]
4WU1X-ray3.204A/4I1-126[»]
4WZDX-ray3.104A/4I1-126[»]
4WZOX-ray3.304A/4I1-126[»]
4X62X-ray3.45M2-119[»]
4X64X-ray3.35M2-119[»]
4X65X-ray3.35M2-119[»]
4X66X-ray3.45M2-119[»]
4Y4OX-ray2.301m/2m1-126[»]
4Y4PX-ray2.501m/2m1-126[»]
4YHHX-ray3.42M2-120[»]
4YPBX-ray3.40QM/XM1-126[»]
4YY3X-ray3.60M1-126[»]
4YZVX-ray3.10QM/XM1-126[»]
4Z3SX-ray2.651m/2m1-126[»]
4Z8CX-ray2.901m/2m1-126[»]
4ZERX-ray3.101m/2m2-117[»]
4ZSNX-ray3.60QM/XM1-126[»]
5A9Zelectron microscopy4.70BQ2-115[»]
5AA0electron microscopy5.00BQ2-115[»]
5BR8X-ray3.40M1-126[»]
5CZPX-ray3.30QM/XM1-126[»]
5D8BX-ray3.63JC/NA1-126[»]
5DFEX-ray3.10QM/XM1-126[»]
5DOXX-ray3.101m/2m1-126[»]
5DOYX-ray2.601m/2m1-126[»]
5E7KX-ray3.204A/4I1-126[»]
5E81X-ray2.954A/4I1-126[»]
5EL4X-ray3.154A/4I1-126[»]
5EL5X-ray3.154A/4I1-126[»]
5EL6X-ray3.104A/4I1-126[»]
5EL7X-ray3.154A/4I1-126[»]
5F8KX-ray2.801m/2m2-117[»]
5FDUX-ray2.901m/2m2-117[»]
5FDVX-ray2.801m/2m2-117[»]
5HAUX-ray3.001m/2m1-126[»]
5HCPX-ray2.891m/2m1-126[»]
5HCQX-ray2.801m/2m1-126[»]
5HCRX-ray2.801m/2m1-126[»]
5HD1X-ray2.701m/2m1-126[»]
5IB7X-ray2.994A/4I1-126[»]
5IB8X-ray3.134A/4I1-126[»]
5IBBX-ray2.964A/4I1-126[»]
5IMQelectron microscopy3.80Q1-126[»]
5IMRelectron microscopy-Q1-126[»]
5IWAX-ray3.50M2-126[»]
5J30X-ray3.20QM/XM1-126[»]
5J3CX-ray3.04QM/XM1-126[»]
5J4BX-ray2.601m/2m1-126[»]
5J4CX-ray2.801m/2m1-126[»]
5J8BX-ray2.60m1-126[»]
5LMNelectron microscopy3.55M1-126[»]
5LMOelectron microscopy4.30M1-126[»]
5LMPelectron microscopy5.35M1-126[»]
5LMQelectron microscopy4.20M1-126[»]
5LMRelectron microscopy4.45M1-126[»]
5LMSelectron microscopy5.10M1-126[»]
5LMTelectron microscopy4.15M1-126[»]
5LMUelectron microscopy4.00M1-126[»]
5LMVelectron microscopy4.90M1-126[»]
5NDJX-ray3.154A/4I1-126[»]
5NDKX-ray2.954A/4I1-126[»]
5OT7electron microscopy3.80L2-120[»]
5UQ7electron microscopy3.50m3-116[»]
5UQ8electron microscopy3.20m3-116[»]
5VP2X-ray2.801m/2m1-126[»]
5W4KX-ray2.701m/2m1-126[»]
5WISX-ray2.701m/2m1-126[»]
5WITX-ray2.601m/2m1-126[»]
5WNPX-ray3.30M2-119[»]
5WNQX-ray3.50M2-119[»]
5WNRX-ray3.50M2-119[»]
5WNSX-ray3.50M2-119[»]
5WNTX-ray3.30M2-119[»]
5WNUX-ray3.40M2-119[»]
5WNVX-ray3.30M2-119[»]
5ZLUelectron microscopy3.60R1-126[»]
6CAEX-ray2.601m/2m1-126[»]
6CAPX-ray3.40M2-119[»]
6CAQX-ray3.40M2-119[»]
6CARX-ray3.40M2-126[»]
6CASX-ray3.50M2-126[»]
6FKRX-ray3.201m/2m2-117[»]
6GSJX-ray2.964A/4I1-126[»]
6GSKX-ray3.364A/4I1-126[»]
6GSLX-ray3.164A/4I1-126[»]
ProteinModelPortaliP80377
SMRiP80377
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1667

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71490; BAD71490; BAD71490
GeneIDi3167962
KEGGittj:TTHA1667
PATRICifig|300852.9.peg.1637

Phylogenomic databases

eggNOGiENOG4108Z04 Bacteria
COG0099 LUCA
HOGENOMiHOG000039879
KOiK02952
OMAiRTKNNSR
PhylomeDBiP80377

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1673-MONOMER

Miscellaneous databases

EvolutionaryTraceiP80377

Family and domain databases

Gene3Di4.10.910.10, 1 hit
HAMAPiMF_01315 Ribosomal_S13_S18, 1 hit
InterProiView protein in InterPro
IPR027437 30s_Rbsml_prot_S13_C
IPR001892 Ribosomal_S13
IPR010979 Ribosomal_S13-like_H2TH
IPR019980 Ribosomal_S13_bac-type
IPR018269 Ribosomal_S13_CS
PANTHERiPTHR10871:SF1 PTHR10871:SF1, 1 hit
PfamiView protein in Pfam
PF00416 Ribosomal_S13, 1 hit
PIRSFiPIRSF002134 Ribosomal_S13, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
TIGRFAMsiTIGR03631 uS13_bact, 1 hit
PROSITEiView protein in PROSITE
PS00646 RIBOSOMAL_S13_1, 1 hit
PS50159 RIBOSOMAL_S13_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRS13_THET8
AccessioniPrimary (citable) accession number: P80377
Secondary accession number(s): Q5SHR3, Q9RA65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: October 10, 2018
This is version 162 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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