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Protein

30S ribosomal protein S11

Gene

rpsK

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Located on the upper part of the platform of the 30S subunit, where it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome, where it interacts both with the Shine-Dalgarno helix and mRNA.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1672-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S11
Gene namesi
Name:rpsK
Synonyms:rps11
Ordered Locus Names:TTHA1666
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001232462 – 12930S ribosomal protein S11Add BLAST128

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to the C-terminus of IF-3; however exactly how IF-3 interacts with the 30S subunit is unclear. May contact the C-terminus of Era.

Protein-protein interaction databases

STRINGi300852.TTHA1666

Structurei

Secondary structure

1129
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi15 – 23Combined sources9
Beta strandi24 – 26Combined sources3
Beta strandi28 – 33Combined sources6
Beta strandi35 – 37Combined sources3
Beta strandi39 – 42Combined sources4
Turni45 – 49Combined sources5
Helixi53 – 56Combined sources4
Helixi58 – 73Combined sources16
Turni74 – 76Combined sources3
Beta strandi79 – 86Combined sources8
Helixi91 – 99Combined sources9
Beta strandi101 – 107Combined sources7
Helixi123 – 125Combined sources3
Turni126 – 128Combined sources3

3D structure databases

ProteinModelPortaliP80376
SMRiP80376
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80376

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108UHH Bacteria
COG0100 LUCA
HOGENOMiHOG000111597
KOiK02948
OMAiKVYVKGP
PhylomeDBiP80376

Family and domain databases

Gene3Di3.30.420.80, 1 hit
HAMAPiMF_01310 Ribosomal_S11, 1 hit
InterProiView protein in InterPro
IPR001971 Ribosomal_S11
IPR019981 Ribosomal_S11_bac-type
IPR018102 Ribosomal_S11_CS
IPR036967 Ribosomal_S11_sf
PANTHERiPTHR11759 PTHR11759, 1 hit
PfamiView protein in Pfam
PF00411 Ribosomal_S11, 1 hit
PIRSFiPIRSF002131 Ribosomal_S11, 1 hit
TIGRFAMsiTIGR03632 uS11_bact, 1 hit
PROSITEiView protein in PROSITE
PS00054 RIBOSOMAL_S11, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80376-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY
60 70 80 90 100
KGSRKGTPYA AQLAALDAAK KAMAYGMQSV DVIVRGTGAG REQAIRALQA
110 120
SGLQVKSIVD DTPVPHNGCR PKKKFRKAS
Length:129
Mass (Da):13,713
Last modified:January 23, 2007 - v3
Checksum:i028E047E6DCE3CA2
GO

Mass spectrometryi

Molecular mass is 13583 Da from positions 2 - 129. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA Translation: BAA75547.1
AP008226 Genomic DNA Translation: BAD71489.1
RefSeqiWP_008633365.1, NC_006461.1
YP_144932.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71489; BAD71489; BAD71489
GeneIDi3168024
KEGGittj:TTHA1666
PATRICifig|300852.9.peg.1636

Similar proteinsi

Entry informationi

Entry nameiRS11_THET8
AccessioniPrimary (citable) accession number: P80376
Secondary accession number(s): Q5SHR4, Q9RA66
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: June 20, 2018
This is version 156 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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