Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ferredoxin-6

Gene

fdxE

Organism
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Ferredoxins are small electron carrier proteins that participate in various redox reactions. FdVI is an essential protein required for growth of R.capsulatus. May be involved in Fe-S cluster assembly.1 Publication1 Publication

Cofactori

[2Fe-2S] cluster3 PublicationsNote: Binds 1 [2Fe-2S] cluster.3 Publications

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi40Iron-sulfur (2Fe-2S)2 Publications1
Metal bindingi46Iron-sulfur (2Fe-2S)2 Publications1
Metal bindingi49Iron-sulfur (2Fe-2S)2 Publications1
Metal bindingi87Iron-sulfur (2Fe-2S)2 Publications1

GO - Molecular functioni

Keywordsi

Biological processElectron transport, Transport
Ligand2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-6
Alternative name(s):
Ferredoxin VI1 Publication
Short name:
FdVI1 Publication
Gene namesi
Name:fdxE1 Publication
OrganismiRhodobacter capsulatus (Rhodopseudomonas capsulata)
Taxonomic identifieri1061 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter

Pathology & Biotechi

Disruption phenotypei

Disruption of this gene is lethal.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002011802 – 107Ferredoxin-6Add BLAST106

Expressioni

Inductioni

Seems to be constitutively expressed. Is expressed at a similar level under N-limited and N-sufficient conditions.1 Publication

Structurei

Secondary structure

1107
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP80306
SMRiP80306
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80306

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 1062Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST105

Sequence similaritiesi

Belongs to the adrenodoxin/putidaredoxin family.Curated

Phylogenomic databases

eggNOGiENOG4107Z7P Bacteria
COG0633 LUCA
HOGENOMiHOG000244518

Family and domain databases

CDDicd00207 fer2, 1 hit
Gene3Di3.10.20.30, 1 hit
InterProiView protein in InterPro
IPR036010 2Fe-2S_ferredoxin-like_sf
IPR001041 2Fe-2S_ferredoxin-type
IPR001055 Adrenodoxin
IPR018298 Adrenodoxin_Fe-S_BS
IPR012675 Beta-grasp_dom_sf
PfamiView protein in Pfam
PF00111 Fer2, 1 hit
PRINTSiPR00355 ADRENODOXIN
SUPFAMiSSF54292 SSF54292, 1 hit
PROSITEiView protein in PROSITE
PS51085 2FE2S_FER_2, 1 hit
PS00814 ADX, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80306-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKIIFIEHN GTRHEVEAKP GLTVMEAARD NGVPGIDADC GGACACSTCH
60 70 80 90 100
AYVDPAWVDK LPKALPTETD MIDFAYEPNP ATSRLTCQIK VTSLLDGLVV

HLPEKQI
Length:107
Mass (Da):11,533
Last modified:November 26, 2014 - v2
Checksum:i64239FF7451D8D1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11304 Genomic DNA Translation: CAA72162.1
PIRiS45612

Genome annotation databases

GeneIDi31491235

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11304 Genomic DNA Translation: CAA72162.1
PIRiS45612

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1E9MX-ray2.07A2-107[»]
1UWMX-ray2.00A2-107[»]
ProteinModelPortaliP80306
SMRiP80306
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi31491235

Phylogenomic databases

eggNOGiENOG4107Z7P Bacteria
COG0633 LUCA
HOGENOMiHOG000244518

Miscellaneous databases

EvolutionaryTraceiP80306

Family and domain databases

CDDicd00207 fer2, 1 hit
Gene3Di3.10.20.30, 1 hit
InterProiView protein in InterPro
IPR036010 2Fe-2S_ferredoxin-like_sf
IPR001041 2Fe-2S_ferredoxin-type
IPR001055 Adrenodoxin
IPR018298 Adrenodoxin_Fe-S_BS
IPR012675 Beta-grasp_dom_sf
PfamiView protein in Pfam
PF00111 Fer2, 1 hit
PRINTSiPR00355 ADRENODOXIN
SUPFAMiSSF54292 SSF54292, 1 hit
PROSITEiView protein in PROSITE
PS51085 2FE2S_FER_2, 1 hit
PS00814 ADX, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiFER6_RHOCA
AccessioniPrimary (citable) accession number: P80306
Secondary accession number(s): Q9R767
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: November 26, 2014
Last modified: December 20, 2017
This is version 91 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again