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Protein

Globin D, coelomic

Gene
N/A
Organism
Molpadia arenicola (Sea cucumber) (Caudina arenicola)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

Caudina arenicola coelomocytes contain four hemoglobin chains labeled A, B, C, D.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi74Iron (heme distal ligand)1
Metal bindingi105Iron (heme proximal ligand)1

GO - Molecular functioni

Keywordsi

Biological processOxygen transport, Transport
LigandHeme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Globin D, coelomic
OrganismiMolpadia arenicola (Sea cucumber) (Caudina arenicola)
Taxonomic identifieri7698 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEchinodermataEleutherozoaEchinozoaHolothuroideaApodaceaMolpadiidaMolpadiidaeMolpadia

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00000524972 – 159Globin D, coelomicAdd BLAST158

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylglycine1 Publication1

Keywords - PTMi

Acetylation

PTM databases

iPTMnetiP80017

Interactioni

Subunit structurei

Homodimer.

Structurei

Secondary structure

1159
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP80017
SMRiP80017
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80017

Family & Domainsi

Sequence similaritiesi

Belongs to the globin family.PROSITE-ProRule annotation

Family and domain databases

Gene3Di1.10.490.10, 1 hit
InterProiView protein in InterPro
IPR000971 Globin
IPR009050 Globin-like_sf
IPR012292 Globin/Proto
PfamiView protein in Pfam
PF00042 Globin, 1 hit
SUPFAMiSSF46458 SSF46458, 1 hit
PROSITEiView protein in PROSITE
PS01033 GLOBIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80017-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGATQSFQSV GDLTPAEKDL IRSTWDQLMT HRTGFVADVF IRIFHNDPTA
60 70 80 90 100
QRKFPQMAGL SPAELRTSRQ MHAHAIRVSA LMTTYIDEMD TEVLPELLAT
110 120 130 140 150
LTRTHDKNHV GKKNYDLFGK VLMEAIKAEL GVGFTKQVHD AWAKTFAIVQ

GVLITKHAS
Length:159
Mass (Da):17,806
Last modified:January 23, 2007 - v3
Checksum:i93FBC89BB9FF33EF
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti3 – 5ATQ → QAT AA sequence (PubMed:2049384).Curated3
Sequence conflicti49T → W AA sequence (PubMed:2049384).Curated1

Sequence databases

PIRiS15979

Similar proteinsi

Cross-referencesi

Sequence databases

PIRiS15979

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1HLMX-ray2.90A2-159[»]
ProteinModelPortaliP80017
SMRiP80017
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiP80017

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP80017

Family and domain databases

Gene3Di1.10.490.10, 1 hit
InterProiView protein in InterPro
IPR000971 Globin
IPR009050 Globin-like_sf
IPR012292 Globin/Proto
PfamiView protein in Pfam
PF00042 Globin, 1 hit
SUPFAMiSSF46458 SSF46458, 1 hit
PROSITEiView protein in PROSITE
PS01033 GLOBIN, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiGLBD_MOLAR
AccessioniPrimary (citable) accession number: P80017
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 92 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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