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Protein

HTH-type transcriptional regulator AbgR

Gene

abgR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Could be the regulator of the abg operon.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi22 – 41H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6671-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator AbgR
Gene namesi
Name:abgR
Ordered Locus Names:b1339, JW1333
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13353 abgR

Pathology & Biotechi

Disruption phenotypei

Cells lacking this gene may lead to an altered expression of abgT.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001055831 – 302HTH-type transcriptional regulator AbgRAdd BLAST302

Proteomic databases

PaxDbiP77744
PRIDEiP77744

Interactioni

Protein-protein interaction databases

BioGridi4262879, 13 interactors
IntActiP77744, 2 interactors
STRINGi316385.ECDH10B_1459

Structurei

3D structure databases

ProteinModelPortaliP77744
SMRiP77744
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 62HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG4106KR7 Bacteria
ENOG410XQ2C LUCA
HOGENOMiHOG000233526
InParanoidiP77744
KOiK14057
OMAiWTMPTPR
PhylomeDBiP77744

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P77744-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFQVKIHQI RAFVEVARQG SIRGASRMLN MSQPALSKSI QELEEGLAAQ
60 70 80 90 100
LFFRRSKGVT LTDAGESFYQ HASLILEELR AAQEDIRQRQ GQLAGQINIG
110 120 130 140 150
MGASISRSLM PAVISRFHQQ HPQVKVRIME GQLVSMINEL RQGELDFTIN
160 170 180 190 200
TYYQGPYDHE FTFEKLLEKQ FAIFCRPGHP AIGARSIKQL LDYSWTMPTP
210 220 230 240 250
HGSYYKQLSE LLDDQAQTPQ VGVVCETFSA CISLVAKSDF LSKLPEEMGC
260 270 280 290 300
DPLHGQGLVM LPVSEILPKA AYYLIQRRDS RQTPLTASLI TQFRRECGYL

QS
Length:302
Mass (Da):34,058
Last modified:February 1, 1997 - v1
Checksum:i57C83FA6DF8ABA66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74421.1
AP009048 Genomic DNA Translation: BAA14941.1
PIRiF64883
RefSeqiNP_415855.1, NC_000913.3
WP_000885458.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74421; AAC74421; b1339
BAA14941; BAA14941; BAA14941
GeneIDi945831
KEGGiecj:JW1333
eco:b1339
PATRICifig|1411691.4.peg.938

Similar proteinsi

Entry informationi

Entry nameiABGR_ECOLI
AccessioniPrimary (citable) accession number: P77744
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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