ydjF

Functionⁱ

Regions

Feature key	Position(s)	DescriptionActions	Graphical view	Length
DNA bindingⁱ	20 – 39	H-T-H motifPROSITE-ProRule annotationAdd BLAST		20

GO - Molecular functionⁱ

DNA binding Source: UniProtKB-KW
DNA binding transcription factor activity Source: InterPro

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

transcription, DNA-templated Source: UniProtKB-KW

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	DNA-binding
Biological process	Transcription, Transcription regulation

Enzyme and pathway databases

BioCycⁱ	EcoCyc:G6957-MONOMER

BioCycⁱ

EcoCyc:G6957-MONOMER

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Uncharacterized HTH-type transcriptional regulator YdjF
Gene namesⁱ	Name:ydjF Ordered Locus Names:b1770, JW1759
Organismⁱ	Escherichia coli (strain K12)
Taxonomic identifierⁱ	83333 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › Escherichia coli
Proteomesⁱ	UP000000318 Componentⁱ: Chromosome UP000000625 Componentⁱ: Chromosome

Organism-specific databases

EcoGeneⁱ	EG13482 ydjF

EcoGeneⁱ

EG13482 ydjF

Subcellular locationⁱ

GO - Cellular componentⁱ

intracellular Source: InterPro

View the complete GO annotation on QuickGO ...

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000050272	1 – 252	Uncharacterized HTH-type transcriptional regulator YdjFAdd BLAST		252

Proteomic databases

PaxDbⁱ	P77721
PRIDEⁱ	P77721

Interactionⁱ

Binary interactionsⁱ

With	Entry	#Exp.	IntAct	Notes
lpdA	P0A9P0	2	EBI-545197,EBI-542856

With

Entry

#Exp.

IntAct

Notes

lpdA

P0A9P0

2

EBI-545197,EBI-542856

Protein-protein interaction databases

BioGridⁱ	4261174, 9 interactors
Database of interacting proteins More...DIPⁱ	DIP-11769N
IntActⁱ	P77721, 17 interactors
STRINGⁱ	316385.ECDH10B_1908

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	P77721
SMRⁱ	P77721
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	3 – 58	HTH deoR-typePROSITE-ProRule annotationAdd BLAST		56

Phylogenomic databases

eggNOGⁱ	ENOG4105E98 Bacteria COG1349 LUCA
HOGENOMⁱ	HOG000224683
InParanoidⁱ	P77721
OMAⁱ	MWQEDRH
PhylomeDBⁱ	P77721

Family and domain databases

Gene3Dⁱ	1.10.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR014036 DeoR_C IPR001034 DeoR_HTH IPR037171 NagB/RpiA_transferase-like IPR018356 Tscrpt_reg_HTH_DeoR_CS IPR036388 WH-like_DNA-bd_sf IPR036390 WH_DNA-bd_sf
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00455 DeoRC, 1 hit PF08220 HTH_DeoR, 1 hit
PRINTSⁱ	PR00037 HTHLACR
SMARTⁱ	View protein in SMART SM00420 HTH_DEOR, 1 hit
SUPFAMⁱ	SSF100950 SSF100950, 1 hit SSF46785 SSF46785, 1 hit
PROSITEⁱ	View protein in PROSITE PS00894 HTH_DEOR_1, 1 hit PS51000 HTH_DEOR_2, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

P77721-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT 
        60         70         80         90        100
RTYGGAVLNT AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD 
       110        120        130        140        150
SSSTVMELLK LLQDRSGLTL LTNSAEAIHV LAQSEIKVVS TGGELNKNTL 
       160        170        180        190        200
SLQGRITKEI IRRYHVDIMV MSCKGLDINS GALDSNEAEA EIKKTMIRQA 
       210        220        230        240        250
TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI AFCKDNNIQL 

VW

Length:252

Mass (Da):28,261

Last modified:February 1, 1997 - v1

Checksum:ⁱ7D76EBB55B1B270C

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U00096 Genomic DNA Translation: AAC74840.1 AP009048 Genomic DNA Translation: BAA15561.1
PIRⁱ	B64937
NCBI Reference Sequences More...RefSeqⁱ	NP_416284.1, NC_000913.3 WP_000719096.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaⁱ	AAC74840; AAC74840; b1770 BAA15561; BAA15561; BAA15561
GeneIDⁱ	946272
KEGGⁱ	ecj:JW1759 eco:b1770
PATRICⁱ	fig\|1411691.4.peg.484

Protein	Similar proteins		Species	Score	Length
P77721	DeoR faimly transcriptional regulator		ECOLX		252
Transcriptional regulator, DeoR family		Escherichia coli 1.2264		252
Predicted DNA-binding transcriptional regulator		ECOLW		252
Uncharacterized protein		Escherichia coli 1-110-08_S3_C1		252
Uncharacterized protein		Escherichia coli 2-210-07_S3_C3		252
+22

Protein	Similar proteins		Species	Score	Length
P77721	DeoR faimly transcriptional regulator		ECOLX		252
Transcriptional regulator, DeoR family		Escherichia coli 1.2264		252
Predicted DNA-binding transcriptional regulator		ECOLW		252
Uncharacterized protein		Escherichia coli 1-110-08_S3_C1		252
Uncharacterized protein		Escherichia coli 2-210-07_S3_C3		252
+322

Protein	Similar proteins		Species	Score	Length
P77721	DeoR faimly transcriptional regulator		ECOLX		252
Transcriptional regulator, DeoR family		Escherichia coli 1.2264		252
Predicted DNA-binding transcriptional regulator		ECOLW		252
Uncharacterized protein		Escherichia coli 1-110-08_S3_C1		252
Uncharacterized protein		Escherichia coli 2-210-07_S3_C3		252
+368

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U00096 Genomic DNA Translation: AAC74840.1 AP009048 Genomic DNA Translation: BAA15561.1
PIRⁱ	B64937
NCBI Reference Sequences More...RefSeqⁱ	NP_416284.1, NC_000913.3 WP_000719096.1, NZ_LN832404.1

3D structure databases

ProteinModelPortalⁱ	P77721
SMRⁱ	P77721
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	4261174, 9 interactors
Database of interacting proteins More...DIPⁱ	DIP-11769N
IntActⁱ	P77721, 17 interactors
STRINGⁱ	316385.ECDH10B_1908

Proteomic databases

PaxDbⁱ	P77721
PRIDEⁱ	P77721

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	AAC74840; AAC74840; b1770 BAA15561; BAA15561; BAA15561
GeneIDⁱ	946272
KEGGⁱ	ecj:JW1759 eco:b1770
PATRICⁱ	fig\|1411691.4.peg.484

Organism-specific databases

EchoBASEⁱ	EB3255
EcoGeneⁱ	EG13482 ydjF

Phylogenomic databases

eggNOGⁱ	ENOG4105E98 Bacteria COG1349 LUCA
HOGENOMⁱ	HOG000224683
InParanoidⁱ	P77721
OMAⁱ	MWQEDRH
PhylomeDBⁱ	P77721

Enzyme and pathway databases

BioCycⁱ	EcoCyc:G6957-MONOMER

BioCycⁱ

EcoCyc:G6957-MONOMER

Miscellaneous databases

Protein Ontology More...PROⁱ	PR:P77721

PROⁱ

PR:P77721

Family and domain databases

Gene3Dⁱ	1.10.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR014036 DeoR_C IPR001034 DeoR_HTH IPR037171 NagB/RpiA_transferase-like IPR018356 Tscrpt_reg_HTH_DeoR_CS IPR036388 WH-like_DNA-bd_sf IPR036390 WH_DNA-bd_sf
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00455 DeoRC, 1 hit PF08220 HTH_DeoR, 1 hit
PRINTSⁱ	PR00037 HTHLACR
SMARTⁱ	View protein in SMART SM00420 HTH_DEOR, 1 hit
SUPFAMⁱ	SSF100950 SSF100950, 1 hit SSF46785 SSF46785, 1 hit
PROSITEⁱ	View protein in PROSITE PS00894 HTH_DEOR_1, 1 hit PS51000 HTH_DEOR_2, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	YDJF_ECOLI
Accessionⁱ	P77721Primary (citable) accession number: P77721
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
	Last sequence update:	February 1, 1997
	Last modified:	April 25, 2018
	This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Prokaryotic Protein Annotation Program

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

Escherichia coli
Escherichia coli (strain K12): entries and cross-references to EcoGene

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - P77721 (YDJF_ECOLI)

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Uncharacterized HTH-type transcriptional regulator YdjF

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Proteomic databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

PTM / Processingⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ