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Protein

Uncharacterized HTH-type transcriptional regulator YdjF

Gene

ydjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 39H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6957-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdjF
Gene namesi
Name:ydjF
Ordered Locus Names:b1770, JW1759
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13482 ydjF

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502721 – 252Uncharacterized HTH-type transcriptional regulator YdjFAdd BLAST252

Proteomic databases

PaxDbiP77721
PRIDEiP77721

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
lpdAP0A9P02EBI-545197,EBI-542856

Protein-protein interaction databases

BioGridi4261174, 9 interactors
DIPiDIP-11769N
IntActiP77721, 17 interactors
STRINGi316385.ECDH10B_1908

Structurei

3D structure databases

ProteinModelPortaliP77721
SMRiP77721
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 58HTH deoR-typePROSITE-ProRule annotationAdd BLAST56

Phylogenomic databases

eggNOGiENOG4105E98 Bacteria
COG1349 LUCA
HOGENOMiHOG000224683
InParanoidiP77721
OMAiMWQEDRH
PhylomeDBiP77721

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014036 DeoR_C
IPR001034 DeoR_HTH
IPR037171 NagB/RpiA_transferase-like
IPR018356 Tscrpt_reg_HTH_DeoR_CS
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00455 DeoRC, 1 hit
PF08220 HTH_DeoR, 1 hit
PRINTSiPR00037 HTHLACR
SMARTiView protein in SMART
SM00420 HTH_DEOR, 1 hit
SUPFAMiSSF100950 SSF100950, 1 hit
SSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS00894 HTH_DEOR_1, 1 hit
PS51000 HTH_DEOR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77721-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT
60 70 80 90 100
RTYGGAVLNT AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD
110 120 130 140 150
SSSTVMELLK LLQDRSGLTL LTNSAEAIHV LAQSEIKVVS TGGELNKNTL
160 170 180 190 200
SLQGRITKEI IRRYHVDIMV MSCKGLDINS GALDSNEAEA EIKKTMIRQA
210 220 230 240 250
TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI AFCKDNNIQL

VW
Length:252
Mass (Da):28,261
Last modified:February 1, 1997 - v1
Checksum:i7D76EBB55B1B270C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74840.1
AP009048 Genomic DNA Translation: BAA15561.1
PIRiB64937
RefSeqiNP_416284.1, NC_000913.3
WP_000719096.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74840; AAC74840; b1770
BAA15561; BAA15561; BAA15561
GeneIDi946272
KEGGiecj:JW1759
eco:b1770
PATRICifig|1411691.4.peg.484

Entry informationi

Entry nameiYDJF_ECOLI
AccessioniPrimary (citable) accession number: P77721
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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