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Protein

UPF0098 protein YbcL

Gene

ybcL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

GO - Biological processi

Enzyme and pathway databases

BioCyciEcoCyc:G6301-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0098 protein YbcL
Gene namesi
Name:ybcL
Ordered Locus Names:b0545, JW0533
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13628 ybcL

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Add BLAST21
ChainiPRO_000003621222 – 183UPF0098 protein YbcLAdd BLAST162

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi46 ↔ 129

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP77368
PRIDEiP77368

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

BioGridi4262074, 22 interactors
STRINGi316385.ECDH10B_0501

Structurei

Secondary structure

1183
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi23 – 25Combined sources3
Helixi37 – 39Combined sources3
Beta strandi55 – 58Combined sources4
Beta strandi66 – 73Combined sources8
Beta strandi82 – 91Combined sources10
Turni99 – 102Combined sources4
Beta strandi121 – 124Combined sources4
Beta strandi140 – 147Combined sources8
Helixi159 – 167Combined sources9
Beta strandi170 – 176Combined sources7

3D structure databases

ProteinModelPortaliP77368
SMRiP77368
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP77368

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0098 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108V1U Bacteria
COG1881 LUCA
HOGENOMiHOG000236247
InParanoidiP77368
KOiK06910
OMAiDGMHRYQ
PhylomeDBiP77368

Family and domain databases

CDDicd00865 PEBP_bact_arch, 1 hit
Gene3Di3.90.280.10, 1 hit
InterProiView protein in InterPro
IPR008914 PEBP
IPR036610 PEBP-like_sf
IPR005247 YbhB_YbcL
PANTHERiPTHR30289 PTHR30289, 1 hit
PfamiView protein in Pfam
PF01161 PBP, 1 hit
SUPFAMiSSF49777 SSF49777, 1 hit
TIGRFAMsiTIGR00481 TIGR00481, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77368-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTLIVSTVL AFITFSAQAA AFQVTSNEIK TGEQLTTSHV FSGFGCEGGN
60 70 80 90 100
TSPSLTWSGV PEGTKSFAVT VYDPDAPTGS GWWHWTVVNI PATVTYLPVD
110 120 130 140 150
AGRRDGTKLP TGAVQGRNDF GYAGFGGACP PKGDKPHHYQ FKVWALKTEK
160 170 180
IPVDSNSSGA LVGYMLNANK IATAEITPVY EIK
Length:183
Mass (Da):19,476
Last modified:February 1, 1997 - v1
Checksum:iFF60F20C9CF061A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA Translation: AAB40742.1
U00096 Genomic DNA Translation: AAC73646.1
AP009048 Genomic DNA Translation: BAE76320.1
PIRiG64786
RefSeqiNP_415077.1, NC_000913.3
WP_001306955.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73646; AAC73646; b0545
BAE76320; BAE76320; BAE76320
GeneIDi945165
KEGGiecj:JW0533
eco:b0545
PATRICifig|1411691.4.peg.1732

Similar proteinsi

Entry informationi

Entry nameiYBCL_ECOLI
AccessioniPrimary (citable) accession number: P77368
Secondary accession number(s): Q2MBN6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 132 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

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