UniProtKB - P77171 (YDCI_ECOLI)
Protein
Uncharacterized HTH-type transcriptional regulator YdcI
Gene
ydcI
Organism
Escherichia coli (strain K12)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 28 – 47 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 20 |
GO - Molecular functioni
- bacterial-type cis-regulatory region sequence-specific DNA binding Source: GO_Central
- DNA binding Source: EcoCyc
- DNA-binding transcription factor activity Source: InterPro
- sequence-specific DNA binding Source: EcoCyc
GO - Biological processi
- negative regulation of transcription, DNA-templated Source: EcoCyc
- regulation of transcription, DNA-templated Source: GO_Central
- transcription, DNA-templated Source: EcoCyc
Keywordsi
Molecular function | DNA-binding |
Biological process | Transcription, Transcription regulation |
Enzyme and pathway databases
BioCyci | EcoCyc:G6737-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Uncharacterized HTH-type transcriptional regulator YdcI |
Gene namesi | Name:ydcI Ordered Locus Names:b1422, JW5226 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
Subcellular locationi
GO - Cellular componenti
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000105783 | 1 – 307 | Uncharacterized HTH-type transcriptional regulator YdcIAdd BLAST | 307 |
Proteomic databases
jPOSTi | P77171 |
PaxDbi | P77171 |
PRIDEi | P77171 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4260183, 10 interactors |
STRINGi | 511145.b1422 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 11 – 68 | HTH lysR-typePROSITE-ProRule annotationAdd BLAST | 58 |
Sequence similaritiesi
Belongs to the LysR transcriptional regulatory family.Curated
Phylogenomic databases
eggNOGi | COG0583, Bacteria |
HOGENOMi | CLU_039613_6_0_6 |
InParanoidi | P77171 |
PhylomeDBi | P77171 |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR005119, LysR_subst-bd IPR000847, Tscrpt_reg_HTH_LysR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00126, HTH_1, 1 hit PF03466, LysR_substrate, 1 hit |
PRINTSi | PR00039, HTHLYSR |
SUPFAMi | SSF46785, SSF46785, 1 hit |
PROSITEi | View protein in PROSITE PS50931, HTH_LYSR, 1 hit |
i Sequence
Sequence statusi: Complete.
P77171-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE
60 70 80 90 100
QLTGARLFER GRQGAQLTLP GEQFLTHAVR VLDAINTAGR SLHRKEGLNN
110 120 130 140 150
DVVRVGALPT AALGILPSVI GQFHQQQKET TLQVATMSNP MILAGLKTGE
160 170 180 190 200
IDIGIGRMSD PELMTGLNYE LLFLESLKLV VRPNHPLLQE NVTLSRVLEW
210 220 230 240 250
PVVVSPEGTA PRQHSDALVQ SQGCKIPSGC IETLSASLSR QLTVEYDYVW
260 270 280 290 300
FVPSGAVKDD LRHATLVALP VPGHGAGEPI GILTRVDATF SSGCQLMINA
IRKSMPF
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC74504.2 AP009048 Genomic DNA Translation: BAA15045.2 |
PIRi | A64894 |
RefSeqi | NP_415939.2, NC_000913.3 WP_000414567.1, NZ_SSZK01000021.1 |
Genome annotation databases
EnsemblBacteriai | AAC74504; AAC74504; b1422 BAA15045; BAA15045; BAA15045 |
GeneIDi | 948865 |
KEGGi | ecj:JW5226 eco:b1422 |
PATRICi | fig|1411691.4.peg.848 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC74504.2 AP009048 Genomic DNA Translation: BAA15045.2 |
PIRi | A64894 |
RefSeqi | NP_415939.2, NC_000913.3 WP_000414567.1, NZ_SSZK01000021.1 |
3D structure databases
SMRi | P77171 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 4260183, 10 interactors |
STRINGi | 511145.b1422 |
Proteomic databases
jPOSTi | P77171 |
PaxDbi | P77171 |
PRIDEi | P77171 |
Genome annotation databases
EnsemblBacteriai | AAC74504; AAC74504; b1422 BAA15045; BAA15045; BAA15045 |
GeneIDi | 948865 |
KEGGi | ecj:JW5226 eco:b1422 |
PATRICi | fig|1411691.4.peg.848 |
Organism-specific databases
EchoBASEi | EB3515 |
Phylogenomic databases
eggNOGi | COG0583, Bacteria |
HOGENOMi | CLU_039613_6_0_6 |
InParanoidi | P77171 |
PhylomeDBi | P77171 |
Enzyme and pathway databases
BioCyci | EcoCyc:G6737-MONOMER |
Miscellaneous databases
PROi | PR:P77171 |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR005119, LysR_subst-bd IPR000847, Tscrpt_reg_HTH_LysR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00126, HTH_1, 1 hit PF03466, LysR_substrate, 1 hit |
PRINTSi | PR00039, HTHLYSR |
SUPFAMi | SSF46785, SSF46785, 1 hit |
PROSITEi | View protein in PROSITE PS50931, HTH_LYSR, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YDCI_ECOLI | |
Accessioni | P77171Primary (citable) accession number: P77171 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 15, 1998 |
Last sequence update: | December 15, 1998 | |
Last modified: | October 7, 2020 | |
This is version 141 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families