UniProtKB - P76103 (YDCO_ECOLI)
Protein
Inner membrane protein YdcO
Gene
ydcO
Organism
Escherichia coli (strain K12)
Status
Functioni
GO - Molecular functioni
- benzoate transmembrane transporter activity Source: InterPro
Enzyme and pathway databases
BioCyci | EcoCyc:B1433-MONOMER ECOL316407:JW5229-MONOMER |
Protein family/group databases
TCDBi | 2.A.46.1.9 the benzoate:h+ symporter (bene) family |
Names & Taxonomyi
Protein namesi | Recommended name: Inner membrane protein YdcO |
Gene namesi | Name:ydcO Ordered Locus Names:b1433, JW5229 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
Subcellular locationi
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 1 – 9 | CytoplasmicSequence analysis | 9 | |
Transmembranei | 10 – 30 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 31 – 42 | PeriplasmicSequence analysisAdd BLAST | 12 | |
Transmembranei | 43 – 63 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 64 – 93 | CytoplasmicSequence analysisAdd BLAST | 30 | |
Transmembranei | 94 – 114 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 115 – 123 | PeriplasmicSequence analysis | 9 | |
Transmembranei | 124 – 144 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 145 – 167 | CytoplasmicSequence analysisAdd BLAST | 23 | |
Transmembranei | 168 – 188 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 189 – 200 | PeriplasmicSequence analysisAdd BLAST | 12 | |
Transmembranei | 201 – 221 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 222 – 246 | CytoplasmicSequence analysisAdd BLAST | 25 | |
Transmembranei | 247 – 267 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 268 – 287 | PeriplasmicSequence analysisAdd BLAST | 20 | |
Transmembranei | 288 – 308 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 309 – 311 | CytoplasmicSequence analysis | 3 | |
Transmembranei | 312 – 332 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 333 – 361 | PeriplasmicSequence analysisAdd BLAST | 29 | |
Transmembranei | 362 – 382 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 383 – 391 | CytoplasmicSequence analysis | 9 |
GO - Cellular componenti
- integral component of membrane Source: UniProtKB-KW
- plasma membrane Source: EcoCyc
Keywords - Cellular componenti
Cell inner membrane, Cell membrane, MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000201320 | 1 – 391 | Inner membrane protein YdcOAdd BLAST | 391 |
Proteomic databases
PaxDbi | P76103 |
PRIDEi | P76103 |
Interactioni
Protein-protein interaction databases
BioGridi | 4261752, 256 interactors |
STRINGi | 511145.b1433 |
Family & Domainsi
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | ENOG4105DKK Bacteria COG3135 LUCA |
HOGENOMi | HOG000221975 |
InParanoidi | P76103 |
KOi | K05782 |
PhylomeDBi | P76103 |
Family and domain databases
InterProi | View protein in InterPro IPR004711 Benzoate_Transporter |
PANTHERi | PTHR30199 PTHR30199, 1 hit |
Pfami | View protein in Pfam PF03594 BenE, 1 hit |
TIGRFAMsi | TIGR00843 benE, 1 hit |
PROSITEi | View protein in PROSITE PS00041 HTH_ARAC_FAMILY_1, 1 hit |
i Sequence
Sequence statusi: Complete.
P76103-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MRLFSIPPPT LLAGFLAVLI GYASSAAIIW QAAIVAGATT AQISGWMTAL
60 70 80 90 100
GLAMGVSTLT LTLWYRVPVL TAWSTPGAAL LVTGLQGLTL NEAIGVFIVT
110 120 130 140 150
NALIVLCGIT GLFARLMRII PHSLAAAMLA GILLRFGLQA FASLDGQFTL
160 170 180 190 200
CGSMLLVWLA TKAVAPRYAV IAAMIIGIVI VIAQGDVVTT DVVFKPVLPT
210 220 230 240 250
YITPDFSFAH SLSVALPLFL VTMASQNAPG IAAMKAAGYS APVSPLIVFT
260 270 280 290 300
GLLALVFSPF GVYSVGIAAI TAAICQSPEA HPDKDQRWLA AAVAGIFYLL
310 320 330 340 350
AGLFGSAITG MMAALPVSWI QMLAGLALLS TIGGSLYQAL HNERERDAAV
360 370 380 390
VAFLVTASGL TLVGIGSAFW GLIAGGVCYV VLNLIADRNR Y
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC74515.2 AP009048 Genomic DNA Translation: BAA15061.2 |
PIRi | D64895 |
RefSeqi | NP_415950.4, NC_000913.3 |
Genome annotation databases
EnsemblBacteriai | AAC74515; AAC74515; b1433 BAA15061; BAA15061; BAA15061 |
GeneIDi | 947247 |
KEGGi | ecj:JW5229 eco:b1433 |
PATRICi | fig|1411691.4.peg.836 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC74515.2 AP009048 Genomic DNA Translation: BAA15061.2 |
PIRi | D64895 |
RefSeqi | NP_415950.4, NC_000913.3 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGridi | 4261752, 256 interactors |
STRINGi | 511145.b1433 |
Protein family/group databases
TCDBi | 2.A.46.1.9 the benzoate:h+ symporter (bene) family |
Proteomic databases
PaxDbi | P76103 |
PRIDEi | P76103 |
Genome annotation databases
EnsemblBacteriai | AAC74515; AAC74515; b1433 BAA15061; BAA15061; BAA15061 |
GeneIDi | 947247 |
KEGGi | ecj:JW5229 eco:b1433 |
PATRICi | fig|1411691.4.peg.836 |
Organism-specific databases
EchoBASEi | EB3521 |
Phylogenomic databases
eggNOGi | ENOG4105DKK Bacteria COG3135 LUCA |
HOGENOMi | HOG000221975 |
InParanoidi | P76103 |
KOi | K05782 |
PhylomeDBi | P76103 |
Enzyme and pathway databases
BioCyci | EcoCyc:B1433-MONOMER ECOL316407:JW5229-MONOMER |
Miscellaneous databases
PROi | PR:P76103 |
Family and domain databases
InterProi | View protein in InterPro IPR004711 Benzoate_Transporter |
PANTHERi | PTHR30199 PTHR30199, 1 hit |
Pfami | View protein in Pfam PF03594 BenE, 1 hit |
TIGRFAMsi | TIGR00843 benE, 1 hit |
PROSITEi | View protein in PROSITE PS00041 HTH_ARAC_FAMILY_1, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YDCO_ECOLI | |
Accessioni | P76103Primary (citable) accession number: P76103 Secondary accession number(s): P77540 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 27, 2002 |
Last sequence update: | March 27, 2002 | |
Last modified: | November 13, 2019 | |
This is version 127 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Complete proteome, Reference proteomeDocuments
- Escherichia coli
Escherichia coli (strain K12): entries and cross-references to EcoGene