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Entry version 117 (16 Oct 2019)
Sequence version 1 (01 Feb 1997)
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Protein
Submitted name:

Bacteriocin

Gene

plnE

Organism
Lactobacillus plantarum
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
GCF_001704315:G1F2R-322-MONOMER

Protein family/group databases

Transport Classification Database

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TCDBi
1.C.29.1.1 the plantaricin ef (plantaricin ef) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
BacteriocinImported
Submitted name:
Bacteriocin peptideImported
Submitted name:
Bacteriocin peptide PlnEImported
Submitted name:
Plantaricin E prepeptideImported
Submitted name:
PlnEImported
Submitted name:
Two-peptide bacteriocin plantaricin EF subunit PlnEImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:plnEImported
ORF Names:AVR82_01555Imported, BIZ32_01745Imported, CFM86_01780Imported, E3O64_02585Imported, Lp19_1630Imported, LPJSA22_00382Imported, LpLQ80_01815Imported, Nizo2891_3051Imported, WP50_04150Imported, WP50_05450Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLactobacillus plantarumImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1590 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000265863 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000076882 Componenti: Unassembled WGS sequence
  • UP000076745 Componenti: Unassembled WGS sequence
  • UP000093269 Componenti: Chromosome
  • UP000094892 Componenti: Unassembled WGS sequence
  • UP000193023 Componenti: Chromosome
  • UP000244922 Componenti: Chromosome
  • UP000297945 Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Database of Orthologous Groups

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OrthoDBi
2168061at2

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P71470-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLQFEKLQYS RLPQKKLAKI SGGFNRGGYN FGKSVRHVVD AIGSVAGIRG

ILKSIR
Length:56
Mass (Da):6,191
Last modified:February 1, 1997 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i45CEC1D5886A7738
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF522077 Genomic DNA Translation: AAS21891.1
DQ323671 Genomic DNA Translation: ABC59159.1
DQ340868 Genomic DNA Translation: ABD15227.1
FJ809773 Genomic DNA Translation: ACO06051.1
GU138149 Genomic DNA Translation: ACY69219.2
GU138150 Genomic DNA Translation: ACY69221.2
GU138151 Genomic DNA Translation: ACY69223.2
GU138152 Genomic DNA Translation: ACY69225.2
GU138153 Genomic DNA Translation: ACY69227.2
GU138154 Genomic DNA Translation: ACY69229.2
GU584090 Genomic DNA Translation: ADE08257.1
HQ651181 Genomic DNA Translation: AEI26309.1
JQ436928 Genomic DNA Translation: AFJ79569.1
KR091953 Genomic DNA Translation: AKI88046.1
KT028600 Genomic DNA Translation: ALN40251.1
KT028601 Genomic DNA Translation: ALN40253.1
CP013749 Genomic DNA Translation: AOB18363.1
CP017363 Genomic DNA Translation: ARO02725.1
CP028977 Genomic DNA Translation: AWI39317.1
CP032359 Genomic DNA Translation: AYA95631.1
X94434 Genomic DNA Translation: CAA64188.1
LBDE01000354 Genomic DNA Translation: KLD61047.1
LBDE01000275 Genomic DNA Translation: KLD61209.1
LUXG01000070 Genomic DNA Translation: KZU74739.1
LUXM01000028 Genomic DNA Translation: KZU94841.1
MCOL01000001 Genomic DNA Translation: ODO60449.1
SOPZ01000002 Genomic DNA Translation: TFE57347.1

NCBI Reference Sequences

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RefSeqi
WP_003641985.1, NZ_VDGF01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
KLD61047; KLD61047; WP50_05450
KLD61209; KLD61209; WP50_04150
KZU74739; KZU74739; Nizo2891_3051
KZU94841; KZU94841; Lp19_1630
OAZ73179; OAZ73179; SRCM101060_02876
ODO60449; ODO60449; LPJSA22_00382

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
lpb:SH83_01850

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1590.142.peg.390

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF522077 Genomic DNA Translation: AAS21891.1
DQ323671 Genomic DNA Translation: ABC59159.1
DQ340868 Genomic DNA Translation: ABD15227.1
FJ809773 Genomic DNA Translation: ACO06051.1
GU138149 Genomic DNA Translation: ACY69219.2
GU138150 Genomic DNA Translation: ACY69221.2
GU138151 Genomic DNA Translation: ACY69223.2
GU138152 Genomic DNA Translation: ACY69225.2
GU138153 Genomic DNA Translation: ACY69227.2
GU138154 Genomic DNA Translation: ACY69229.2
GU584090 Genomic DNA Translation: ADE08257.1
HQ651181 Genomic DNA Translation: AEI26309.1
JQ436928 Genomic DNA Translation: AFJ79569.1
KR091953 Genomic DNA Translation: AKI88046.1
KT028600 Genomic DNA Translation: ALN40251.1
KT028601 Genomic DNA Translation: ALN40253.1
CP013749 Genomic DNA Translation: AOB18363.1
CP017363 Genomic DNA Translation: ARO02725.1
CP028977 Genomic DNA Translation: AWI39317.1
CP032359 Genomic DNA Translation: AYA95631.1
X94434 Genomic DNA Translation: CAA64188.1
LBDE01000354 Genomic DNA Translation: KLD61047.1
LBDE01000275 Genomic DNA Translation: KLD61209.1
LUXG01000070 Genomic DNA Translation: KZU74739.1
LUXM01000028 Genomic DNA Translation: KZU94841.1
MCOL01000001 Genomic DNA Translation: ODO60449.1
SOPZ01000002 Genomic DNA Translation: TFE57347.1
RefSeqiWP_003641985.1, NZ_VDGF01000002.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JUINMR-A24-56[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...
PDBe-KBiSearch...

Protein family/group databases

TCDBi1.C.29.1.1 the plantaricin ef (plantaricin ef) family

Genome annotation databases

EnsemblBacteriaiKLD61047; KLD61047; WP50_05450
KLD61209; KLD61209; WP50_04150
KZU74739; KZU74739; Nizo2891_3051
KZU94841; KZU94841; Lp19_1630
OAZ73179; OAZ73179; SRCM101060_02876
ODO60449; ODO60449; LPJSA22_00382
KEGGilpb:SH83_01850
PATRICifig|1590.142.peg.390

Phylogenomic databases

OrthoDBi2168061at2

Enzyme and pathway databases

BioCyciGCF_001704315:G1F2R-322-MONOMER

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiP71470_LACPN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P71470
Secondary accession number(s): D1MET8, Q7AKV7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: October 16, 2019
This is version 117 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported
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