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Entry version 143 (08 May 2019)
Sequence version 1 (21 Jul 1986)
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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Binds to the 5S rRNA independently of L5 and L18. Not required for binding of the 5S rRNA/L5/L18 subcomplex to 23S rRNA.3 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
EcoCyc:EG10885-MONOMER
ECOL316407:JW2173-MONOMER
MetaCyc:EG10885-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L25
Alternative name(s):
Large ribosomal subunit protein bL251 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rplY
Ordered Locus Names:b2185, JW2173
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

Escherichia coli strain K12 genome database

More...
EcoGenei
EG10885 rplY

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001814781 – 9450S ribosomal protein L25Add BLAST94

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
P68919

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
P68919

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P68919

PRoteomics IDEntifications database

More...
PRIDEi
P68919

2D gel databases

Two-dimensional polyacrylamide gel electrophoresis database from the Geneva University Hospital

More...
SWISS-2DPAGEi
P68919

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 50S ribosomal subunit (PubMed:1093874, PubMed:1100506, Ref. 4, PubMed:10094780, PubMed:10756104, PubMed:12809609, PubMed:16272117, PubMed:25310980, PubMed:24844575, PubMed:27934701, PubMed:27906160, PubMed:27906161); part of the 5S rRNA/L5/L18/L25 subcomplex (PubMed:354687, PubMed:8925931). Contacts the 5S rRNA (PubMed:3298242, PubMed:10562563, PubMed:10696113).18 Publications

Protein-protein interaction databases

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-3807 50S large ribosomal subunit

Database of interacting proteins

More...
DIPi
DIP-35885N

Protein interaction database and analysis system

More...
IntActi
P68919, 15 interactors

STRING: functional protein association networks

More...
STRINGi
511145.b2185

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

194
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1B75NMR-A1-94[»]
1D6KNMR-A1-94[»]
1DFUX-ray1.80P1-94[»]
1ML5electron microscopy14.00v1-94[»]
2J28electron microscopy8.00V1-94[»]
2RDOelectron microscopy9.10V1-94[»]
3BBXelectron microscopy10.00V1-94[»]
3J5Lelectron microscopy6.60V1-94[»]
3J7Zelectron microscopy3.90V1-94[»]
3J8Gelectron microscopy5.00W1-94[»]
3J9Yelectron microscopy3.90V1-94[»]
3J9Zelectron microscopy3.60LT1-94[»]
3JA1electron microscopy3.60LX1-94[»]
3JBUelectron microscopy3.64w1-94[»]
3JBVelectron microscopy3.32w1-94[»]
3JCDelectron microscopy3.70V1-94[»]
3JCEelectron microscopy3.20V1-94[»]
3JCJelectron microscopy3.70U1-94[»]
3JCNelectron microscopy4.60V1-94[»]
487Delectron microscopy7.50N1-94[»]
4CSUelectron microscopy5.50W1-94[»]
4U1UX-ray2.95BV/DV1-94[»]
4U1VX-ray3.00BV/DV1-94[»]
4U20X-ray2.90BV/DV1-94[»]
4U24X-ray2.90BV/DV1-94[»]
4U25X-ray2.90BV/DV1-94[»]
4U26X-ray2.80BV/DV1-94[»]
4U27X-ray2.80BV/DV1-94[»]
4UY8electron microscopy3.8081-94[»]
4V47electron microscopy12.30AT1-94[»]
4V48electron microscopy11.50AT1-94[»]
4V4HX-ray3.46BV/DV1-94[»]
4V4QX-ray3.46BV/DV1-94[»]
4V4Velectron microscopy15.00BT1-94[»]
4V4Welectron microscopy15.00BT1-94[»]
4V50X-ray3.22BV/DV1-94[»]
4V52X-ray3.21BV/DV1-94[»]
4V53X-ray3.54BV/DV1-94[»]
4V54X-ray3.30BV/DV1-94[»]
4V55X-ray4.00BV/DV1-94[»]
4V56X-ray3.93BV/DV1-94[»]
4V57X-ray3.50BV/DV1-94[»]
4V5BX-ray3.74AV/CV1-94[»]
4V5Helectron microscopy5.80BW1-94[»]
4V5YX-ray4.45BV/DV1-94[»]
4V64X-ray3.50BV/DV1-94[»]
4V65electron microscopy9.00BC1-94[»]
4V66electron microscopy9.00BC1-94[»]
4V69electron microscopy6.70BV1-94[»]
4V6CX-ray3.19BV/DV1-94[»]
4V6DX-ray3.81BV/DV1-94[»]
4V6EX-ray3.71BV/DV1-94[»]
4V6Kelectron microscopy8.25AW1-94[»]
4V6Lelectron microscopy13.20BW1-94[»]
4V6Melectron microscopy7.10BV1-94[»]
4V6Nelectron microscopy12.10AX1-94[»]
4V6Oelectron microscopy14.70BX1-94[»]
4V6Pelectron microscopy13.50BX1-94[»]
4V6Qelectron microscopy11.50BX1-94[»]
4V6Relectron microscopy11.50BX1-94[»]
4V6Selectron microscopy13.10AX1-94[»]
4V6Telectron microscopy8.30BV1-94[»]
4V6Velectron microscopy9.80BZ1-94[»]
4V6Yelectron microscopy12.00BV1-94[»]
4V6Zelectron microscopy12.00BV1-94[»]
4V70electron microscopy17.00BV1-94[»]
4V71electron microscopy20.00BV1-94[»]
4V72electron microscopy13.00BV1-94[»]
4V73electron microscopy15.00BV1-94[»]
4V74electron microscopy17.00BV1-94[»]
4V75electron microscopy12.00BV1-94[»]
4V76electron microscopy17.00BV1-94[»]
4V77electron microscopy17.00BV1-94[»]
4V78electron microscopy20.00BV1-94[»]
4V79electron microscopy15.00BV1-94[»]
4V7Aelectron microscopy9.00BV1-94[»]
4V7Belectron microscopy6.80BV1-94[»]
4V7Celectron microscopy7.60BX1-94[»]
4V7Delectron microscopy7.60AY1-94[»]
4V7Ielectron microscopy9.60AV1-94[»]
4V7SX-ray3.25BV/DV1-94[»]
4V7TX-ray3.19BV/DV1-94[»]
4V7UX-ray3.10BV/DV1-94[»]
4V7VX-ray3.29BV/DV1-94[»]
4V85X-ray3.20BZ1-94[»]
4V89X-ray3.70BZ1-94[»]
4V9CX-ray3.30BV/DV1-94[»]
4V9DX-ray3.00CV/DV1-94[»]
4V9OX-ray2.90AV/CV/EV/GV1-94[»]
4V9PX-ray2.90AV/CV/EV/GV1-94[»]
4WF1X-ray3.09BV/DV1-94[»]
4WOIX-ray3.00BV/CV1-94[»]
4WWWX-ray3.10RV/YV1-94[»]
4YBBX-ray2.10CW/DW1-94[»]
5ADYelectron microscopy4.50V1-94[»]
5AFIelectron microscopy2.90V1-94[»]
5AKAelectron microscopy5.70V1-94[»]
5GADelectron microscopy3.70W1-94[»]
5GAEelectron microscopy3.33W1-94[»]
5GAFelectron microscopy4.30W1-94[»]
5GAGelectron microscopy3.80W1-94[»]
5GAHelectron microscopy3.80W1-94[»]
5H5Uelectron microscopy3.00W1-94[»]
5IQRelectron microscopy3.00V1-94[»]
5IT8X-ray3.12CW/DW1-94[»]
5J5BX-ray2.80CW/DW1-94[»]
5J7LX-ray3.00CW/DW1-94[»]
5J88X-ray3.32CW/DW1-94[»]
5J8AX-ray3.10CW/DW1-94[»]
5J91X-ray2.96CW/DW1-94[»]
5JC9X-ray3.03CW/DW1-94[»]
5JTEelectron microscopy3.60BV1-94[»]
5JU8electron microscopy3.60BV1-94[»]
5KCRelectron microscopy3.601Z1-94[»]
5KCSelectron microscopy3.901Z1-94[»]
5KPSelectron microscopy3.90V1-94[»]
5KPVelectron microscopy4.10U1-94[»]
5KPWelectron microscopy3.90U1-94[»]
5KPXelectron microscopy3.90U1-94[»]
5L3Pelectron microscopy3.70Z1-94[»]
5LZAelectron microscopy3.60V1-94[»]
5LZBelectron microscopy5.30V1-94[»]
5LZCelectron microscopy4.80V1-94[»]
5LZDelectron microscopy3.40V1-94[»]
5LZEelectron microscopy3.50V1-94[»]
5LZFelectron microscopy4.60V1-94[»]
5MDVelectron microscopy2.97V1-94[»]
5MDWelectron microscopy3.06V1-94[»]
5MDYelectron microscopy3.35V1-94[»]
5MDZelectron microscopy3.10V1-94[»]
5MGPelectron microscopy3.10V1-94[»]
5NCOelectron microscopy4.80W1-94[»]
5NP6electron microscopy3.60t1-94[»]
5NWYelectron microscopy2.93i1-94[»]
5O2Relectron microscopy3.40V1-94[»]
5U4Ielectron microscopy3.50W1-94[»]
5U9Felectron microscopy3.20241-94[»]
5U9Gelectron microscopy3.20241-94[»]
5UYKelectron microscopy3.90241-94[»]
5UYLelectron microscopy3.60241-94[»]
5UYMelectron microscopy3.20241-94[»]
5UYNelectron microscopy4.00241-94[»]
5UYPelectron microscopy3.90241-94[»]
5UYQelectron microscopy3.80241-94[»]
5WDTelectron microscopy3.00V2-93[»]
5WE4electron microscopy3.10V2-93[»]
5WE6electron microscopy3.40V2-93[»]
5WFKelectron microscopy3.40V2-93[»]
6BU8electron microscopy3.50241-94[»]
6BY1X-ray3.94CV/DV1-94[»]
6C4Ielectron microscopy3.24W1-94[»]
6DNCelectron microscopy3.70Z1-94[»]
6ENFelectron microscopy3.20V1-94[»]
6ENJelectron microscopy3.70V1-94[»]
6ENUelectron microscopy3.10V1-94[»]
6GBZelectron microscopy3.80V1-94[»]
6GC0electron microscopy3.80V1-94[»]
6GC4electron microscopy4.30V1-94[»]
6GC8electron microscopy3.80V1-94[»]
6GWTelectron microscopy3.80V1-94[»]
6GXMelectron microscopy3.80V1-94[»]
6GXNelectron microscopy3.90V1-94[»]
6GXOelectron microscopy3.90V1-94[»]
6GXPelectron microscopy4.40V1-94[»]
6H4Nelectron microscopy3.00V1-94[»]
6H58electron microscopy7.90V/VV1-94[»]
6HRMelectron microscopy2.96V1-94[»]
6I0Yelectron microscopy3.2081-94[»]
6I7VX-ray2.90CW/DW1-94[»]
6Q98electron microscopy4.30V1-94[»]

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P68919

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
P68919

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105KW6 Bacteria
COG1825 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000277629

KEGG Orthology (KO)

More...
KOi
K02897

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P68919

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00495 Ribosomal_L25_TL5_CTC, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.240.10, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_01336 Ribosomal_L25, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR020056 Rbsml_L25/Gln-tRNA_synth_N
IPR029751 Ribosomal_L25
IPR011035 Ribosomal_L25/Gln-tRNA_synth
IPR020055 Ribosomal_L25_short

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01386 Ribosomal_L25p, 1 hit

ProDom; a protein domain database

More...
ProDomi
View protein in ProDom or Entries sharing at least one domain
PD012503 Ribosomal_L25, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50715 SSF50715, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P68919-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFTINAEVRK EQGKGASRRL RAANKFPAII YGGKEAPLAI ELDHDKVMNM
60 70 80 90
QAKAEFYSEV LTIVVDGKEI KVKAQDVQRH PYKPKLQHID FVRA
Length:94
Mass (Da):10,693
Last modified:July 21, 1986 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i85DAF5ACBA1C5F86
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti86 – 94LQHIDFVRA → CSTSTSFALNC in AAA16413 (Ref. 6) Curated9

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 10693.4 Da from positions 1 - 94. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
D13326 Genomic DNA Translation: BAA02585.1
U00008 Genomic DNA Translation: AAA16413.1
U00096 Genomic DNA Translation: AAC75246.1
AP009048 Genomic DNA Translation: BAE76650.1

Protein sequence database of the Protein Information Resource

More...
PIRi
S16002 R5EC25

NCBI Reference Sequences

More...
RefSeqi
NP_416690.1, NC_000913.3
WP_000494183.1, NZ_LN832404.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAC75246; AAC75246; b2185
BAE76650; BAE76650; BAE76650

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
945618

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ecj:JW2173
eco:b2185

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1411691.4.peg.51

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13326 Genomic DNA Translation: BAA02585.1
U00008 Genomic DNA Translation: AAA16413.1
U00096 Genomic DNA Translation: AAC75246.1
AP009048 Genomic DNA Translation: BAE76650.1
PIRiS16002 R5EC25
RefSeqiNP_416690.1, NC_000913.3
WP_000494183.1, NZ_LN832404.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1B75NMR-A1-94[»]
1D6KNMR-A1-94[»]
1DFUX-ray1.80P1-94[»]
1ML5electron microscopy14.00v1-94[»]
2J28electron microscopy8.00V1-94[»]
2RDOelectron microscopy9.10V1-94[»]
3BBXelectron microscopy10.00V1-94[»]
3J5Lelectron microscopy6.60V1-94[»]
3J7Zelectron microscopy3.90V1-94[»]
3J8Gelectron microscopy5.00W1-94[»]
3J9Yelectron microscopy3.90V1-94[»]
3J9Zelectron microscopy3.60LT1-94[»]
3JA1electron microscopy3.60LX1-94[»]
3JBUelectron microscopy3.64w1-94[»]
3JBVelectron microscopy3.32w1-94[»]
3JCDelectron microscopy3.70V1-94[»]
3JCEelectron microscopy3.20V1-94[»]
3JCJelectron microscopy3.70U1-94[»]
3JCNelectron microscopy4.60V1-94[»]
487Delectron microscopy7.50N1-94[»]
4CSUelectron microscopy5.50W1-94[»]
4U1UX-ray2.95BV/DV1-94[»]
4U1VX-ray3.00BV/DV1-94[»]
4U20X-ray2.90BV/DV1-94[»]
4U24X-ray2.90BV/DV1-94[»]
4U25X-ray2.90BV/DV1-94[»]
4U26X-ray2.80BV/DV1-94[»]
4U27X-ray2.80BV/DV1-94[»]
4UY8electron microscopy3.8081-94[»]
4V47electron microscopy12.30AT1-94[»]
4V48electron microscopy11.50AT1-94[»]
4V4HX-ray3.46BV/DV1-94[»]
4V4QX-ray3.46BV/DV1-94[»]
4V4Velectron microscopy15.00BT1-94[»]
4V4Welectron microscopy15.00BT1-94[»]
4V50X-ray3.22BV/DV1-94[»]
4V52X-ray3.21BV/DV1-94[»]
4V53X-ray3.54BV/DV1-94[»]
4V54X-ray3.30BV/DV1-94[»]
4V55X-ray4.00BV/DV1-94[»]
4V56X-ray3.93BV/DV1-94[»]
4V57X-ray3.50BV/DV1-94[»]
4V5BX-ray3.74AV/CV1-94[»]
4V5Helectron microscopy5.80BW1-94[»]
4V5YX-ray4.45BV/DV1-94[»]
4V64X-ray3.50BV/DV1-94[»]
4V65electron microscopy9.00BC1-94[»]
4V66electron microscopy9.00BC1-94[»]
4V69electron microscopy6.70BV1-94[»]
4V6CX-ray3.19BV/DV1-94[»]
4V6DX-ray3.81BV/DV1-94[»]
4V6EX-ray3.71BV/DV1-94[»]
4V6Kelectron microscopy8.25AW1-94[»]
4V6Lelectron microscopy13.20BW1-94[»]
4V6Melectron microscopy7.10BV1-94[»]
4V6Nelectron microscopy12.10AX1-94[»]
4V6Oelectron microscopy14.70BX1-94[»]
4V6Pelectron microscopy13.50BX1-94[»]
4V6Qelectron microscopy11.50BX1-94[»]
4V6Relectron microscopy11.50BX1-94[»]
4V6Selectron microscopy13.10AX1-94[»]
4V6Telectron microscopy8.30BV1-94[»]
4V6Velectron microscopy9.80BZ1-94[»]
4V6Yelectron microscopy12.00BV1-94[»]
4V6Zelectron microscopy12.00BV1-94[»]
4V70electron microscopy17.00BV1-94[»]
4V71electron microscopy20.00BV1-94[»]
4V72electron microscopy13.00BV1-94[»]
4V73electron microscopy15.00BV1-94[»]
4V74electron microscopy17.00BV1-94[»]
4V75electron microscopy12.00BV1-94[»]
4V76electron microscopy17.00BV1-94[»]
4V77electron microscopy17.00BV1-94[»]
4V78electron microscopy20.00BV1-94[»]
4V79electron microscopy15.00BV1-94[»]
4V7Aelectron microscopy9.00BV1-94[»]
4V7Belectron microscopy6.80BV1-94[»]
4V7Celectron microscopy7.60BX1-94[»]
4V7Delectron microscopy7.60AY1-94[»]
4V7Ielectron microscopy9.60AV1-94[»]
4V7SX-ray3.25BV/DV1-94[»]
4V7TX-ray3.19BV/DV1-94[»]
4V7UX-ray3.10BV/DV1-94[»]
4V7VX-ray3.29BV/DV1-94[»]
4V85X-ray3.20BZ1-94[»]
4V89X-ray3.70BZ1-94[»]
4V9CX-ray3.30BV/DV1-94[»]
4V9DX-ray3.00CV/DV1-94[»]
4V9OX-ray2.90AV/CV/EV/GV1-94[»]
4V9PX-ray2.90AV/CV/EV/GV1-94[»]
4WF1X-ray3.09BV/DV1-94[»]
4WOIX-ray3.00BV/CV1-94[»]
4WWWX-ray3.10RV/YV1-94[»]
4YBBX-ray2.10CW/DW1-94[»]
5ADYelectron microscopy4.50V1-94[»]
5AFIelectron microscopy2.90V1-94[»]
5AKAelectron microscopy5.70V1-94[»]
5GADelectron microscopy3.70W1-94[»]
5GAEelectron microscopy3.33W1-94[»]
5GAFelectron microscopy4.30W1-94[»]
5GAGelectron microscopy3.80W1-94[»]
5GAHelectron microscopy3.80W1-94[»]
5H5Uelectron microscopy3.00W1-94[»]
5IQRelectron microscopy3.00V1-94[»]
5IT8X-ray3.12CW/DW1-94[»]
5J5BX-ray2.80CW/DW1-94[»]
5J7LX-ray3.00CW/DW1-94[»]
5J88X-ray3.32CW/DW1-94[»]
5J8AX-ray3.10CW/DW1-94[»]
5J91X-ray2.96CW/DW1-94[»]
5JC9X-ray3.03CW/DW1-94[»]
5JTEelectron microscopy3.60BV1-94[»]
5JU8electron microscopy3.60BV1-94[»]
5KCRelectron microscopy3.601Z1-94[»]
5KCSelectron microscopy3.901Z1-94[»]
5KPSelectron microscopy3.90V1-94[»]
5KPVelectron microscopy4.10U1-94[»]
5KPWelectron microscopy3.90U1-94[»]
5KPXelectron microscopy3.90U1-94[»]
5L3Pelectron microscopy3.70Z1-94[»]
5LZAelectron microscopy3.60V1-94[»]
5LZBelectron microscopy5.30V1-94[»]
5LZCelectron microscopy4.80V1-94[»]
5LZDelectron microscopy3.40V1-94[»]
5LZEelectron microscopy3.50V1-94[»]
5LZFelectron microscopy4.60V1-94[»]
5MDVelectron microscopy2.97V1-94[»]
5MDWelectron microscopy3.06V1-94[»]
5MDYelectron microscopy3.35V1-94[»]
5MDZelectron microscopy3.10V1-94[»]
5MGPelectron microscopy3.10V1-94[»]
5NCOelectron microscopy4.80W1-94[»]
5NP6electron microscopy3.60t1-94[»]
5NWYelectron microscopy2.93i1-94[»]
5O2Relectron microscopy3.40V1-94[»]
5U4Ielectron microscopy3.50W1-94[»]
5U9Felectron microscopy3.20241-94[»]
5U9Gelectron microscopy3.20241-94[»]
5UYKelectron microscopy3.90241-94[»]
5UYLelectron microscopy3.60241-94[»]
5UYMelectron microscopy3.20241-94[»]
5UYNelectron microscopy4.00241-94[»]
5UYPelectron microscopy3.90241-94[»]
5UYQelectron microscopy3.80241-94[»]
5WDTelectron microscopy3.00V2-93[»]
5WE4electron microscopy3.10V2-93[»]
5WE6electron microscopy3.40V2-93[»]
5WFKelectron microscopy3.40V2-93[»]
6BU8electron microscopy3.50241-94[»]
6BY1X-ray3.94CV/DV1-94[»]
6C4Ielectron microscopy3.24W1-94[»]
6DNCelectron microscopy3.70Z1-94[»]
6ENFelectron microscopy3.20V1-94[»]
6ENJelectron microscopy3.70V1-94[»]
6ENUelectron microscopy3.10V1-94[»]
6GBZelectron microscopy3.80V1-94[»]
6GC0electron microscopy3.80V1-94[»]
6GC4electron microscopy4.30V1-94[»]
6GC8electron microscopy3.80V1-94[»]
6GWTelectron microscopy3.80V1-94[»]
6GXMelectron microscopy3.80V1-94[»]
6GXNelectron microscopy3.90V1-94[»]
6GXOelectron microscopy3.90V1-94[»]
6GXPelectron microscopy4.40V1-94[»]
6H4Nelectron microscopy3.00V1-94[»]
6H58electron microscopy7.90V/VV1-94[»]
6HRMelectron microscopy2.96V1-94[»]
6I0Yelectron microscopy3.2081-94[»]
6I7VX-ray2.90CW/DW1-94[»]
6Q98electron microscopy4.30V1-94[»]
SMRiP68919
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

ComplexPortaliCPX-3807 50S large ribosomal subunit
DIPiDIP-35885N
IntActiP68919, 15 interactors
STRINGi511145.b2185

2D gel databases

SWISS-2DPAGEiP68919

Proteomic databases

EPDiP68919
jPOSTiP68919
PaxDbiP68919
PRIDEiP68919

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75246; AAC75246; b2185
BAE76650; BAE76650; BAE76650
GeneIDi945618
KEGGiecj:JW2173
eco:b2185
PATRICifig|1411691.4.peg.51

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...
EchoBASEi
EB0878
EcoGeneiEG10885 rplY

Phylogenomic databases

eggNOGiENOG4105KW6 Bacteria
COG1825 LUCA
HOGENOMiHOG000277629
KOiK02897
PhylomeDBiP68919

Enzyme and pathway databases

BioCyciEcoCyc:EG10885-MONOMER
ECOL316407:JW2173-MONOMER
MetaCyc:EG10885-MONOMER

Miscellaneous databases

EvolutionaryTraceiP68919

Protein Ontology

More...
PROi
PR:P68919

Family and domain databases

CDDicd00495 Ribosomal_L25_TL5_CTC, 1 hit
Gene3Di2.40.240.10, 1 hit
HAMAPiMF_01336 Ribosomal_L25, 1 hit
InterProiView protein in InterPro
IPR020056 Rbsml_L25/Gln-tRNA_synth_N
IPR029751 Ribosomal_L25
IPR011035 Ribosomal_L25/Gln-tRNA_synth
IPR020055 Ribosomal_L25_short
PfamiView protein in Pfam
PF01386 Ribosomal_L25p, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012503 Ribosomal_L25, 1 hit
SUPFAMiSSF50715 SSF50715, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL25_ECOLI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P68919
Secondary accession number(s): P02426, Q2MAQ6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: May 8, 2019
This is version 143 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
UniProt is an ELIXIR core data resource
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