UniProtKB - P67699 (YDDM_ECOLI)
Protein
Uncharacterized HTH-type transcriptional regulator YddM
Gene
yddM
Organism
Escherichia coli (strain K12)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 24 – 43 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 20 |
GO - Molecular functioni
- DNA binding Source: UniProtKB-KW
Keywordsi
Molecular function | DNA-binding |
Biological process | Transcription, Transcription regulation |
Enzyme and pathway databases
BioCyci | EcoCyc:G6774-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Uncharacterized HTH-type transcriptional regulator YddM |
Gene namesi | Name:yddM Ordered Locus Names:b1477, JW5908 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000149759 | 1 – 94 | Uncharacterized HTH-type transcriptional regulator YddMAdd BLAST | 94 |
Proteomic databases
jPOSTi | P67699 |
PaxDbi | P67699 |
PRIDEi | P67699 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4262904, 7 interactors |
STRINGi | 511145.b1477 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 13 – 67 | HTH cro/C1-typePROSITE-ProRule annotationAdd BLAST | 55 |
Sequence similaritiesi
Belongs to the VapA/VapI family.Curated
Phylogenomic databases
eggNOGi | COG3093, Bacteria |
HOGENOMi | CLU_140230_2_1_6 |
PhylomeDBi | P67699 |
Family and domain databases
CDDi | cd00093, HTH_XRE, 1 hit |
Gene3Di | 1.10.260.40, 1 hit |
InterProi | View protein in InterPro IPR001387, Cro/C1-type_HTH IPR010982, Lambda_DNA-bd_dom_sf IPR013430, Toxin_antidote_HigA |
PANTHERi | PTHR36924, PTHR36924, 1 hit |
Pfami | View protein in Pfam PF01381, HTH_3, 1 hit |
SMARTi | View protein in SMART SM00530, HTH_XRE, 1 hit |
SUPFAMi | SSF47413, SSF47413, 1 hit |
TIGRFAMsi | TIGR02607, antidote_HigA, 1 hit |
PROSITEi | View protein in PROSITE PS50943, HTH_CROC1, 1 hit |
i Sequence
Sequence statusi: Complete.
P67699-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKMANHPRPG DIIQESLDEL NVSLREFARA MEIAPSTASR LLTGKAALTP
60 70 80 90
EMAIKLSVVI GSSPQMWLNL QNAWSLAEAE KTVDVSRLRR LVTQ
Sequence cautioni
The sequence BAE76451 differs from that shown. Reason: Erroneous initiation. Extended N-terminus.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAD13441.2 AP009048 Genomic DNA Translation: BAE76451.1 Different initiation. |
PIRi | H64900 |
RefSeqi | NP_415994.4, NC_000913.3 WP_000781370.1, NZ_STEB01000054.1 |
Genome annotation databases
EnsemblBacteriai | AAD13441; AAD13441; b1477 BAE76451; BAE76451; BAE76451 |
GeneIDi | 52076859 946040 |
KEGGi | ecj:JW5908 eco:b1477 |
PATRICi | fig|1411691.4.peg.790 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAD13441.2 AP009048 Genomic DNA Translation: BAE76451.1 Different initiation. |
PIRi | H64900 |
RefSeqi | NP_415994.4, NC_000913.3 WP_000781370.1, NZ_STEB01000054.1 |
3D structure databases
SMRi | P67699 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 4262904, 7 interactors |
STRINGi | 511145.b1477 |
Proteomic databases
jPOSTi | P67699 |
PaxDbi | P67699 |
PRIDEi | P67699 |
Genome annotation databases
EnsemblBacteriai | AAD13441; AAD13441; b1477 BAE76451; BAE76451; BAE76451 |
GeneIDi | 52076859 946040 |
KEGGi | ecj:JW5908 eco:b1477 |
PATRICi | fig|1411691.4.peg.790 |
Organism-specific databases
EchoBASEi | EB3546 |
Phylogenomic databases
eggNOGi | COG3093, Bacteria |
HOGENOMi | CLU_140230_2_1_6 |
PhylomeDBi | P67699 |
Enzyme and pathway databases
BioCyci | EcoCyc:G6774-MONOMER |
Miscellaneous databases
PROi | PR:P67699 |
Family and domain databases
CDDi | cd00093, HTH_XRE, 1 hit |
Gene3Di | 1.10.260.40, 1 hit |
InterProi | View protein in InterPro IPR001387, Cro/C1-type_HTH IPR010982, Lambda_DNA-bd_dom_sf IPR013430, Toxin_antidote_HigA |
PANTHERi | PTHR36924, PTHR36924, 1 hit |
Pfami | View protein in Pfam PF01381, HTH_3, 1 hit |
SMARTi | View protein in SMART SM00530, HTH_XRE, 1 hit |
SUPFAMi | SSF47413, SSF47413, 1 hit |
TIGRFAMsi | TIGR02607, antidote_HigA, 1 hit |
PROSITEi | View protein in PROSITE PS50943, HTH_CROC1, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YDDM_ECOLI | |
Accessioni | P67699Primary (citable) accession number: P67699 Secondary accession number(s): P76125, Q2MBA5 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 11, 2004 |
Last sequence update: | October 11, 2004 | |
Last modified: | December 2, 2020 | |
This is version 108 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families