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Protein

Uncharacterized lipoprotein YgdI

Gene

ygdI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7453-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YgdI
Gene namesi
Name:ygdI
Ordered Locus Names:b2809, JW5448
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13081 ygdI

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19PROSITE-ProRule annotationAdd BLAST19
ChainiPRO_000001804820 – 75Uncharacterized lipoprotein YgdIAdd BLAST56

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi20N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi20S-diacylglycerol cysteinePROSITE-ProRule annotation1

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP65292
PRIDEiP65292

Interactioni

Protein-protein interaction databases

BioGridi4261125, 10 interactors
DIPiDIP-48041N
IntActiP65292, 2 interactors
STRINGi316385.ECDH10B_2979

Structurei

3D structure databases

ProteinModelPortaliP65292
SMRiP65292
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YgdR.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105M5B Bacteria
ENOG4111UW1 LUCA
HOGENOMiHOG000282509

Family and domain databases

InterProiView protein in InterPro
IPR010305 DUF903
IPR010920 LSM_dom_sf
PANTHERiPTHR37011 PTHR37011, 1 hit
PfamiView protein in Pfam
PF06004 DUF903, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit
PROSITEiView protein in PROSITE
PS51257 PROKAR_LIPOPROTEIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P65292-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKTAAIISA CMLTFALSAC SGSNYVMHTN DGRTIVSDGK PQTDNDTGMI
60 70
SYKDANGNKQ QINRTDVKEM VELDQ
Length:75
Mass (Da):8,174
Last modified:October 11, 2004 - v1
Checksum:iF3D6717F8B7EBEC8
GO

Sequence cautioni

The sequence AAB40459 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA Translation: AAB40459.1 Different initiation.
U00096 Genomic DNA Translation: AAC75851.2
AP009048 Genomic DNA Translation: BAE76881.1
RefSeqiNP_417289.2, NC_000913.3
WP_000750398.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75851; AAC75851; b2809
BAE76881; BAE76881; BAE76881
GeneIDi947276
KEGGiecj:JW5448
eco:b2809
PATRICifig|511145.12.peg.2909

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA Translation: AAB40459.1 Different initiation.
U00096 Genomic DNA Translation: AAC75851.2
AP009048 Genomic DNA Translation: BAE76881.1
RefSeqiNP_417289.2, NC_000913.3
WP_000750398.1, NZ_LN832404.1

3D structure databases

ProteinModelPortaliP65292
SMRiP65292
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261125, 10 interactors
DIPiDIP-48041N
IntActiP65292, 2 interactors
STRINGi316385.ECDH10B_2979

Proteomic databases

PaxDbiP65292
PRIDEiP65292

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75851; AAC75851; b2809
BAE76881; BAE76881; BAE76881
GeneIDi947276
KEGGiecj:JW5448
eco:b2809
PATRICifig|511145.12.peg.2909

Organism-specific databases

EchoBASEiEB2890
EcoGeneiEG13081 ygdI

Phylogenomic databases

eggNOGiENOG4105M5B Bacteria
ENOG4111UW1 LUCA
HOGENOMiHOG000282509

Enzyme and pathway databases

BioCyciEcoCyc:G7453-MONOMER

Miscellaneous databases

PROiPR:P65292

Family and domain databases

InterProiView protein in InterPro
IPR010305 DUF903
IPR010920 LSM_dom_sf
PANTHERiPTHR37011 PTHR37011, 1 hit
PfamiView protein in Pfam
PF06004 DUF903, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit
PROSITEiView protein in PROSITE
PS51257 PROKAR_LIPOPROTEIN, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYGDI_ECOLI
AccessioniPrimary (citable) accession number: P65292
Secondary accession number(s): Q2MA25, Q46924
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 7, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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Main funding by: National Institutes of Health

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