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Protein

40S ribosomal protein S13

Gene

Rps13

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-MMU-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-MMU-72649 Translation initiation complex formation
R-MMU-72689 Formation of a pool of free 40S subunits
R-MMU-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-MMU-72702 Ribosomal scanning and start codon recognition
R-MMU-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:Rps13
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:1915302 Rps13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001156621 – 15140S ribosomal protein S13Add BLAST151

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei27N6-acetyllysine; alternateBy similarity1
Modified residuei27N6-succinyllysine; alternateCombined sources1
Modified residuei30PhosphoserineBy similarity1
Modified residuei34N6-succinyllysineCombined sources1
Modified residuei38PhosphotyrosineBy similarity1
Cross-linki43Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP62301
PaxDbiP62301
PeptideAtlasiP62301
PRIDEiP62301

PTM databases

iPTMnetiP62301
PhosphoSitePlusiP62301
SwissPalmiP62301

Expressioni

Gene expression databases

BgeeiENSMUSG00000090862
CleanExiMM_RPS13
ExpressionAtlasiP62301 baseline and differential
GenevisibleiP62301 MM

Interactioni

Protein-protein interaction databases

BioGridi212630, 5 interactors
DIPiDIP-59976N
IntActiP62301, 2 interactors
STRINGi10090.ENSMUSP00000126294

Structurei

3D structure databases

ProteinModelPortaliP62301
SMRiP62301
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400 Eukaryota
COG0184 LUCA
GeneTreeiENSGT00390000017491
HOGENOMiHOG000180723
HOVERGENiHBG000938
InParanoidiP62301
KOiK02953
OMAiWHLVKKA
OrthoDBiEOG091G0X8F
PhylomeDBiP62301
TreeFamiTF300190

Family and domain databases

CDDicd00353 Ribosomal_S15p_S13e, 1 hit
HAMAPiMF_01343_A Ribosomal_S15_A, 1 hit
InterProiView protein in InterPro
IPR012606 Ribosomal_S13/S15_N
IPR000589 Ribosomal_S15
IPR023029 Ribosomal_S15P
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR11885 PTHR11885, 1 hit
PfamiView protein in Pfam
PF08069 Ribosomal_S13_N, 1 hit
PF00312 Ribosomal_S15, 1 hit
SMARTiView protein in SMART
SM01386 Ribosomal_S13_N, 1 hit
SM01387 Ribosomal_S15, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit
PROSITEiView protein in PROSITE
PS00362 RIBOSOMAL_S15, 1 hit

Sequencei

Sequence statusi: Complete.

P62301-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI
60 70 80 90 100
GVILRDSHGV AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK
110 120 130 140 150
HLERNRKDKD AKFRLILIES RIHRLARYYK TKRVLPPNWK YESSTASALV

A
Length:151
Mass (Da):17,222
Last modified:January 23, 2007 - v2
Checksum:i23F94D38F87B8D53
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK012479 mRNA Translation: BAB28268.1
AK018703 mRNA Translation: BAB31354.1
AK076060 mRNA Translation: BAC36154.1
CCDSiCCDS52370.1
RefSeqiNP_080809.1, NM_026533.3
UniGeneiMm.14798
Mm.345443
Mm.425541

Genome annotation databases

EnsembliENSMUST00000170953; ENSMUSP00000126294; ENSMUSG00000090862
GeneIDi68052
KEGGimmu:68052
UCSCiuc009jje.2 mouse

Similar proteinsi

Entry informationi

Entry nameiRS13_MOUSE
AccessioniPrimary (citable) accession number: P62301
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 130 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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