Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S13

Gene

RPS13

Organism
Sus scrofa (Pig)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:RPS13
OrganismiSus scrofa (Pig)
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001156631 – ›10740S ribosomal protein S13Add BLAST›107

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei27N6-acetyllysine; alternateBy similarity1
Modified residuei27N6-succinyllysine; alternateBy similarity1
Modified residuei30PhosphoserineBy similarity1
Modified residuei34N6-succinyllysineBy similarity1
Modified residuei38PhosphotyrosineBy similarity1
Cross-linki43Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP62279
PeptideAtlasiP62279
PRIDEiP62279

Expressioni

Gene expression databases

GenevisibleiP62279 SS

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000014220

Structurei

3D structure databases

ProteinModelPortaliP62279
SMRiP62279
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400 Eukaryota
COG0184 LUCA
HOGENOMiHOG000180723
HOVERGENiHBG000938
InParanoidiP62279
OrthoDBiEOG091G0X8F

Family and domain databases

InterProiView protein in InterPro
IPR012606 Ribosomal_S13/S15_N
IPR023029 Ribosomal_S15P
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR11885 PTHR11885, 1 hit
PfamiView protein in Pfam
PF08069 Ribosomal_S13_N, 1 hit
SMARTiView protein in SMART
SM01386 Ribosomal_S13_N, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit

Sequencei

Sequence statusi: Fragment.

P62279-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI
60 70 80 90 100
GVILRDSHGV AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK

HLERNRK
Length:107
Mass (Da):12,034
Last modified:January 23, 2007 - v2
Checksum:iDCEA99A09274C0DE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1071

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
F14525 mRNA Translation: CAA23105.1
UniGeneiSsc.1172

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
F14525 mRNA Translation: CAA23105.1
UniGeneiSsc.1172

3D structure databases

ProteinModelPortaliP62279
SMRiP62279
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000014220

Proteomic databases

PaxDbiP62279
PeptideAtlasiP62279
PRIDEiP62279

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0400 Eukaryota
COG0184 LUCA
HOGENOMiHOG000180723
HOVERGENiHBG000938
InParanoidiP62279
OrthoDBiEOG091G0X8F

Gene expression databases

GenevisibleiP62279 SS

Family and domain databases

InterProiView protein in InterPro
IPR012606 Ribosomal_S13/S15_N
IPR023029 Ribosomal_S15P
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR11885 PTHR11885, 1 hit
PfamiView protein in Pfam
PF08069 Ribosomal_S13_N, 1 hit
SMARTiView protein in SMART
SM01386 Ribosomal_S13_N, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRS13_PIG
AccessioniPrimary (citable) accession number: P62279
Secondary accession number(s): P19116, Q02546, Q29200
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: January 23, 2007
Last modified: February 28, 2018
This is version 80 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again