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Protein

50S ribosomal protein L10e

Gene

rpl10e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This is 1 of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains. Modeling places the A and P site tRNAs in close proximity to this protein.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10eUniRule annotation
Gene namesi
Name:rpl10eUniRule annotation
Ordered Locus Names:rrnAC2357
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHalobacterialesHaloarculaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001471321 – 17750S ribosomal protein L10eAdd BLAST177

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Weakly binds 5S rRNA. Probably binds the A and P site tRNAs.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC2357

Structurei

Secondary structure

1177
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP60617
SMRiP60617
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP60617

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL16 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04113 Archaea
COG0197 LUCA
HOGENOMiHOG000223755
KOiK02866
OMAiPYTRKEY
OrthoDBiPOG093Z0C8R

Family and domain databases

CDDicd01433 Ribosomal_L16_L10e, 1 hit
Gene3Di3.90.1170.10, 1 hit
HAMAPiMF_00448 Ribosomal_L10e, 1 hit
InterProiView protein in InterPro
IPR001197 Ribosomal_L10e
IPR016180 Ribosomal_L10e/L16
IPR036920 Ribosomal_L10e/L16_sf
IPR022981 Ribosomal_L10e_arc
IPR018255 Ribosomal_L10e_CS
PANTHERiPTHR11726 PTHR11726, 1 hit
PfamiView protein in Pfam
PF00252 Ribosomal_L16, 1 hit
PIRSFiPIRSF005590 Ribosomal_L10, 1 hit
SUPFAMiSSF54686 SSF54686, 1 hit
PROSITEiView protein in PROSITE
PS01257 RIBOSOMAL_L10E, 1 hit

Sequencei

Sequence statusi: Complete.

P60617-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSDKPASMYR DIDKPAYTRR EYITGIPGSK IAQHKMGRKQ KDADDYPVQI
60 70 80 90 100
SLIVEETVQL RHGSLEASRL SANRHLIKEL GEEGDYKMTL RKFPHQVLRE
110 120 130 140 150
NKQATGAGAD RVSDGMRAAF GKIVGTAARV QAGEQLFTAY CNVEDAEHVK
160 170
EAFRRAYNKI TPSCRIKVER GEELLIA
Length:177
Mass (Da):19,908
Last modified:January 4, 2005 - v2
Checksum:iE7A72FE3683D2BDB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA Translation: AAV47175.1
RefSeqiWP_007189393.1, NC_006396.1

Genome annotation databases

EnsemblBacteriaiAAV47175; AAV47175; rrnAC2357
GeneIDi3130436
KEGGihma:rrnAC2357
PATRICifig|272569.17.peg.2976

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA Translation: AAV47175.1
RefSeqiWP_007189393.1, NC_006396.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40F14-129[»]
1JJ2X-ray2.40H14-130[»]
1K73X-ray3.01J14-130[»]
1K8AX-ray3.00J14-130[»]
1K9MX-ray3.00J14-130[»]
1KC8X-ray3.01J14-130[»]
1KD1X-ray3.00J14-130[»]
1KQSX-ray3.10H14-130[»]
1M1KX-ray3.20J14-130[»]
1M90X-ray2.80J14-130[»]
1ML5electron microscopy14.00p18-129[»]
1N8RX-ray3.00J14-130[»]
1NJIX-ray3.00J14-130[»]
1Q7YX-ray3.20J14-130[»]
1Q81X-ray2.95J14-130[»]
1Q82X-ray2.98J14-130[»]
1Q86X-ray3.00J14-130[»]
1QVFX-ray3.10H14-130[»]
1QVGX-ray2.90H14-130[»]
1S72X-ray2.40H4-166[»]
1VQ4X-ray2.70H4-166[»]
1VQ5X-ray2.60H4-166[»]
1VQ6X-ray2.70H4-166[»]
1VQ7X-ray2.50H4-166[»]
1VQ8X-ray2.20H4-166[»]
1VQ9X-ray2.40H4-166[»]
1VQKX-ray2.30H4-166[»]
1VQLX-ray2.30H4-166[»]
1VQMX-ray2.30H4-166[»]
1VQNX-ray2.40H4-166[»]
1VQOX-ray2.20H4-166[»]
1VQPX-ray2.25H4-166[»]
1W2BX-ray3.50H14-130[»]
1YHQX-ray2.40H1-177[»]
1YI2X-ray2.65H1-177[»]
1YIJX-ray2.60H1-177[»]
1YITX-ray2.80H1-177[»]
1YJ9X-ray2.90H1-177[»]
1YJNX-ray3.00H1-177[»]
1YJWX-ray2.90H1-177[»]
2OTJX-ray2.90H4-166[»]
2OTLX-ray2.70H4-166[»]
2QA4X-ray3.00H4-177[»]
2QEXX-ray2.90H1-177[»]
3CC2X-ray2.40H1-177[»]
3CC4X-ray2.70H1-177[»]
3CC7X-ray2.70H1-177[»]
3CCEX-ray2.75H1-177[»]
3CCJX-ray2.70H1-177[»]
3CCLX-ray2.90H1-177[»]
3CCMX-ray2.55H1-177[»]
3CCQX-ray2.90H1-177[»]
3CCRX-ray3.00H1-177[»]
3CCSX-ray2.95H1-177[»]
3CCUX-ray2.80H1-177[»]
3CCVX-ray2.90H1-177[»]
3CD6X-ray2.75H1-177[»]
3CMAX-ray2.80H1-177[»]
3CMEX-ray2.95H1-177[»]
3CPWX-ray2.70H1-177[»]
3G4SX-ray3.20H1-177[»]
3G6EX-ray2.70H1-177[»]
3G71X-ray2.85H1-177[»]
3I55X-ray3.11H1-166[»]
3I56X-ray2.90H1-166[»]
4ADXelectron microscopy6.60H1-177[»]
4V9FX-ray2.40H1-177[»]
ProteinModelPortaliP60617
SMRiP60617
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC2357

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV47175; AAV47175; rrnAC2357
GeneIDi3130436
KEGGihma:rrnAC2357
PATRICifig|272569.17.peg.2976

Phylogenomic databases

eggNOGiarCOG04113 Archaea
COG0197 LUCA
HOGENOMiHOG000223755
KOiK02866
OMAiPYTRKEY
OrthoDBiPOG093Z0C8R

Miscellaneous databases

EvolutionaryTraceiP60617

Family and domain databases

CDDicd01433 Ribosomal_L16_L10e, 1 hit
Gene3Di3.90.1170.10, 1 hit
HAMAPiMF_00448 Ribosomal_L10e, 1 hit
InterProiView protein in InterPro
IPR001197 Ribosomal_L10e
IPR016180 Ribosomal_L10e/L16
IPR036920 Ribosomal_L10e/L16_sf
IPR022981 Ribosomal_L10e_arc
IPR018255 Ribosomal_L10e_CS
PANTHERiPTHR11726 PTHR11726, 1 hit
PfamiView protein in Pfam
PF00252 Ribosomal_L16, 1 hit
PIRSFiPIRSF005590 Ribosomal_L10, 1 hit
SUPFAMiSSF54686 SSF54686, 1 hit
PROSITEiView protein in PROSITE
PS01257 RIBOSOMAL_L10E, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL10E_HALMA
AccessioniPrimary (citable) accession number: P60617
Secondary accession number(s): Q5UZX7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: January 4, 2005
Last modified: October 10, 2018
This is version 104 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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