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UniProtKB - P60494 (RL28_THET8)
Protein
50S ribosomal protein L28
Gene
rpmB
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Status
Functioni
GO - Molecular functioni
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L28 |
Gene namesi | Name:rpmB Ordered Locus Names:TTHA0042 |
Organismi | Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) |
Taxonomic identifieri | 300852 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed1 Publication | |||
ChainiPRO_0000178577 | 2 – 98 | 50S ribosomal protein L28Add BLAST | 97 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
Protein-protein interaction databases
IntActi | P60494, 6 interactors |
STRINGi | 300852.55771424 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
AlphaFoldDBi | P60494 |
SMRi | P60494 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P60494 |
Family & Domainsi
Sequence similaritiesi
Belongs to the bacterial ribosomal protein bL28 family.Curated
Phylogenomic databases
eggNOGi | COG0227, Bacteria |
HOGENOMi | CLU_064548_6_0_0 |
OMAi | MAKVCEV |
Family and domain databases
HAMAPi | MF_00373, Ribosomal_L28, 1 hit |
InterProi | View protein in InterPro IPR034704, L28p-like IPR026569, Ribo_L28/L24 IPR001383, Ribosomal_L28 |
Pfami | View protein in Pfam PF00830, Ribosomal_L28, 1 hit |
SUPFAMi | SSF143800, SSF143800, 1 hit |
TIGRFAMsi | TIGR00009, L28, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
P60494-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR
60 70 80 90
VRVAGQEITF RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL
Mass spectrometryi
Molecular mass is 10848 Da. Determined by MALDI. 1 Publication
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP008226 Genomic DNA Translation: BAD69865.1 |
RefSeqi | WP_008631133.1, NC_006461.1 YP_143308.1, NC_006461.1 |
Genome annotation databases
EnsemblBacteriai | BAD69865; BAD69865; BAD69865 |
GeneIDi | 3168111 |
KEGGi | ttj:TTHA0042 |
PATRICi | fig|300852.9.peg.40 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP008226 Genomic DNA Translation: BAD69865.1 |
RefSeqi | WP_008631133.1, NC_006461.1 YP_143308.1, NC_006461.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1VVJ | X-ray | 3.44 | R1/Y1 | 1-98 | [»] | |
1VY4 | X-ray | 2.60 | B1/D1 | 1-98 | [»] | |
1VY5 | X-ray | 2.55 | B1/D1 | 1-98 | [»] | |
1VY6 | X-ray | 2.90 | B1/D1 | 1-98 | [»] | |
1VY7 | X-ray | 2.80 | B1/D1 | 1-98 | [»] | |
4L47 | X-ray | 3.22 | R1/Y1 | 1-98 | [»] | |
4L71 | X-ray | 3.90 | R1/Y1 | 1-98 | [»] | |
4LEL | X-ray | 3.90 | R1/Y1 | 1-98 | [»] | |
4LFZ | X-ray | 3.92 | R1/Y1 | 1-98 | [»] | |
4LNT | X-ray | 2.94 | R1/Y1 | 1-98 | [»] | |
4LSK | X-ray | 3.48 | R1/Y1 | 1-98 | [»] | |
4LT8 | X-ray | 3.14 | R1/Y1 | 1-98 | [»] | |
4P6F | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
4P70 | X-ray | 3.68 | R1/Y1 | 1-98 | [»] | |
4TUA | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
4TUB | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
4TUC | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
4TUD | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
4TUE | X-ray | 3.50 | R1/Y1 | 1-98 | [»] | |
4V51 | X-ray | 2.80 | B1/D1 | 2-98 | [»] | |
4V5A | X-ray | 3.50 | B1/D1 | 2-98 | [»] | |
4V5C | X-ray | 3.30 | B1/D1 | 1-98 | [»] | |
4V5D | X-ray | 3.50 | B1/D1 | 1-98 | [»] | |
4V5E | X-ray | 3.45 | B1/D1 | 1-98 | [»] | |
4V5F | X-ray | 3.60 | B1/D1 | 1-98 | [»] | |
4V5G | X-ray | 3.60 | B1/D1 | 1-98 | [»] | |
4V5J | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V5K | X-ray | 3.20 | B1/D1 | 1-98 | [»] | |
4V5L | X-ray | 3.10 | B1 | 1-98 | [»] | |
4V5M | electron microscopy | 7.80 | B1 | 1-98 | [»] | |
4V5N | electron microscopy | 7.60 | B1 | 1-98 | [»] | |
4V5P | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V5Q | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V5R | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V5S | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V68 | electron microscopy | 6.40 | B1 | 8-96 | [»] | |
4V6A | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V6F | X-ray | 3.10 | AZ/DZ | 1-98 | [»] | |
4V6G | X-ray | 3.50 | BZ/DZ | 1-98 | [»] | |
4V7J | X-ray | 3.30 | A1/B1 | 1-98 | [»] | |
4V7K | X-ray | 3.60 | A1/B1 | 1-98 | [»] | |
4V7L | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V7M | X-ray | 3.45 | B1/D1 | 1-98 | [»] | |
4V7W | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V7X | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V7Y | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V7Z | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V87 | X-ray | 3.10 | AZ/DZ | 2-98 | [»] | |
4V8A | X-ray | 3.20 | A1/B1 | 1-98 | [»] | |
4V8B | X-ray | 3.00 | BZ/DZ | 1-98 | [»] | |
4V8C | X-ray | 3.30 | AZ/BZ | 1-98 | [»] | |
4V8D | X-ray | 3.00 | BZ/DZ | 1-98 | [»] | |
4V8E | X-ray | 3.30 | AZ/CZ | 1-98 | [»] | |
4V8F | X-ray | 3.30 | AZ/DZ | 1-98 | [»] | |
4V8G | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V8H | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V8I | X-ray | 2.70 | B1/D1 | 1-98 | [»] | |
4V8J | X-ray | 3.90 | B1/D1 | 1-98 | [»] | |
4V8N | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4V8O | X-ray | 3.80 | B1 | 1-98 | [»] | |
4V8Q | X-ray | 3.10 | A1 | 1-98 | [»] | |
4V8U | X-ray | 3.70 | B1/D1 | 1-98 | [»] | |
4V8X | X-ray | 3.35 | B1/D1 | 1-98 | [»] | |
4V90 | X-ray | 2.95 | B1 | 2-98 | [»] | |
4V95 | X-ray | 3.20 | B1/D1 | 1-98 | [»] | |
4V97 | X-ray | 3.52 | B1/D1 | 1-98 | [»] | |
4V9A | X-ray | 3.30 | BZ/DZ | 1-98 | [»] | |
4V9B | X-ray | 3.10 | BZ/DZ | 1-98 | [»] | |
4V9H | X-ray | 2.86 | B1 | 1-98 | [»] | |
4V9I | X-ray | 3.30 | B1/D1 | 3-95 | [»] | |
4V9R | X-ray | 3.00 | B1/D1 | 1-98 | [»] | |
4V9S | X-ray | 3.10 | B1/D1 | 1-98 | [»] | |
4W2E | X-ray | 2.90 | 1 | 1-98 | [»] | |
4W2F | X-ray | 2.40 | B1/D1 | 1-98 | [»] | |
4W2G | X-ray | 2.55 | B1/D1 | 1-98 | [»] | |
4W2H | X-ray | 2.70 | B1/D1 | 1-98 | [»] | |
4W2I | X-ray | 2.70 | B1/D1 | 1-98 | [»] | |
4W4G | X-ray | 3.30 | R1/Y1 | 1-98 | [»] | |
4WPO | X-ray | 2.80 | A1/C1 | 1-98 | [»] | |
4WQ1 | X-ray | 3.10 | F5/J8 | 1-98 | [»] | |
4WQF | X-ray | 2.80 | A1/C1 | 1-98 | [»] | |
4WQR | X-ray | 3.15 | F5/J8 | 1-98 | [»] | |
4WQU | X-ray | 2.80 | A1/C1 | 1-98 | [»] | |
4WQY | X-ray | 2.80 | A1/C1 | 1-98 | [»] | |
4WR6 | X-ray | 3.05 | F5/J8 | 1-98 | [»] | |
4WRA | X-ray | 3.05 | F5/J8 | 1-98 | [»] | |
4WRO | X-ray | 3.05 | J8 | 1-98 | [»] | |
4WSD | X-ray | 2.95 | F5/J8 | 1-98 | [»] | |
4WSM | X-ray | 3.30 | F5/J8 | 1-98 | [»] | |
4WT1 | X-ray | 3.05 | F5/J8 | 1-98 | [»] | |
4WT8 | X-ray | 3.40 | CH/DH | 3-95 | [»] | |
4WU1 | X-ray | 3.20 | F5/J8 | 1-98 | [»] | |
4WZD | X-ray | 3.10 | F5/J8 | 1-98 | [»] | |
4WZO | X-ray | 3.30 | F5/J8 | 1-98 | [»] | |
4Y4O | X-ray | 2.30 | 11/21 | 1-98 | [»] | |
4Y4P | X-ray | 2.50 | 11/21 | 1-98 | [»] | |
4YPB | X-ray | 3.40 | R1/Y1 | 1-98 | [»] | |
4YZV | X-ray | 3.10 | R1/Y1 | 1-98 | [»] | |
4Z3S | X-ray | 2.65 | 11/21 | 1-98 | [»] | |
4Z8C | X-ray | 2.90 | 11/21 | 1-98 | [»] | |
4ZER | X-ray | 3.10 | 11/21 | 2-98 | [»] | |
4ZSN | X-ray | 3.60 | R1/Y1 | 1-98 | [»] | |
5CZP | X-ray | 3.30 | R1/Y1 | 1-98 | [»] | |
5D8B | X-ray | 3.63 | RB/V | 1-98 | [»] | |
5DFE | X-ray | 3.10 | R1/Y1 | 1-98 | [»] | |
5DOX | X-ray | 3.10 | 11/21 | 1-98 | [»] | |
5DOY | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
5E7K | X-ray | 3.20 | F5/J8 | 1-98 | [»] | |
5E81 | X-ray | 2.95 | F5/J8 | 1-98 | [»] | |
5EL4 | X-ray | 3.15 | F5/J8 | 1-98 | [»] | |
5EL5 | X-ray | 3.15 | F5/J8 | 1-98 | [»] | |
5EL6 | X-ray | 3.10 | F5/J8 | 1-98 | [»] | |
5EL7 | X-ray | 3.15 | F5/J8 | 1-98 | [»] | |
5F8K | X-ray | 2.80 | 11/21 | 2-98 | [»] | |
5FDU | X-ray | 2.90 | 11/21 | 2-98 | [»] | |
5FDV | X-ray | 2.80 | 11/21 | 2-98 | [»] | |
5HAU | X-ray | 3.00 | 1Z/2Z | 1-98 | [»] | |
5HCP | X-ray | 2.89 | 11/21 | 1-98 | [»] | |
5HCQ | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
5HCR | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
5HD1 | X-ray | 2.70 | 11/21 | 1-98 | [»] | |
5IB7 | X-ray | 2.99 | F5/J8 | 1-98 | [»] | |
5IB8 | X-ray | 3.13 | F5/J8 | 1-98 | [»] | |
5IBB | X-ray | 2.96 | F5/J8 | 1-98 | [»] | |
5J30 | X-ray | 3.20 | R1/Y1 | 1-98 | [»] | |
5J3C | X-ray | 3.04 | R1/Y1 | 1-98 | [»] | |
5J4B | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
5J4C | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
5J8B | X-ray | 2.60 | 1 | 1-98 | [»] | |
5NDJ | X-ray | 3.15 | F5/J8 | 1-98 | [»] | |
5NDK | X-ray | 2.95 | F5/J8 | 1-98 | [»] | |
5OT7 | electron microscopy | 3.80 | W | 3-96 | [»] | |
5UQ7 | electron microscopy | 3.50 | 1 | 2-98 | [»] | |
5UQ8 | electron microscopy | 3.20 | 1 | 2-98 | [»] | |
5VP2 | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
5VPO | X-ray | 3.34 | R1/Y1 | 1-98 | [»] | |
5VPP | X-ray | 3.90 | R1/Y1 | 1-98 | [»] | |
5W4K | X-ray | 2.70 | 11/21 | 1-98 | [»] | |
5WIS | X-ray | 2.70 | 11/21 | 1-98 | [»] | |
5WIT | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
6BUW | X-ray | 3.50 | R1/Y1 | 1-98 | [»] | |
6BZ6 | X-ray | 3.18 | R1/Y1 | 1-98 | [»] | |
6BZ7 | X-ray | 3.68 | R1/Y1 | 1-98 | [»] | |
6BZ8 | X-ray | 3.74 | R1/Y1 | 1-98 | [»] | |
6C5L | X-ray | 3.20 | B1/D1 | 1-98 | [»] | |
6CAE | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
6CFJ | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
6CFK | X-ray | 2.70 | 11/21 | 1-98 | [»] | |
6CFL | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
6CZR | X-ray | 3.14 | 11/21 | 2-98 | [»] | |
6FKR | X-ray | 3.20 | 11/21 | 2-98 | [»] | |
6GSJ | X-ray | 2.96 | F5/J8 | 1-98 | [»] | |
6GSK | X-ray | 3.36 | F5/J8 | 1-98 | [»] | |
6GSL | X-ray | 3.16 | F5/J8 | 1-98 | [»] | |
6GZQ | electron microscopy | 3.28 | W1 | 2-98 | [»] | |
6GZX | electron microscopy | 4.57 | W1/W2 | 2-98 | [»] | |
6GZZ | electron microscopy | 4.13 | W1/W2 | 2-98 | [»] | |
6N9E | X-ray | 3.70 | 11/21 | 1-98 | [»] | |
6N9F | X-ray | 3.70 | 11/21 | 1-98 | [»] | |
6ND5 | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
6ND6 | X-ray | 2.85 | 11/21 | 1-98 | [»] | |
6NDK | X-ray | 3.64 | R1/Y1 | 1-98 | [»] | |
6NSH | X-ray | 3.40 | R1/Y1 | 1-98 | [»] | |
6NTA | X-ray | 3.10 | R1/Y1 | 1-98 | [»] | |
6NUO | X-ray | 3.20 | R1/Y1 | 1-98 | [»] | |
6NWY | X-ray | 3.50 | R1/Y1 | 1-98 | [»] | |
6O3M | X-ray | 3.97 | R1/Y1 | 1-98 | [»] | |
6O97 | X-ray | 2.75 | 11/21 | 1-98 | [»] | |
6OF1 | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
6OF6 | X-ray | 3.20 | R1/Y1 | 1-98 | [»] | |
6OJ2 | X-ray | 3.20 | R1/Y1 | 1-98 | [»] | |
6OPE | X-ray | 3.10 | R1/Y1 | 1-98 | [»] | |
6ORD | X-ray | 3.10 | R1/Y1 | 1-98 | [»] | |
6OSI | X-ray | 4.14 | R1/Y1 | 1-98 | [»] | |
6OTR | X-ray | 3.12 | R1/Y1 | 1-98 | [»] | |
6OXA | X-ray | 3.25 | R1/Y1 | 1-98 | [»] | |
6OXI | X-ray | 3.50 | R1/Y1 | 1-98 | [»] | |
6Q95 | electron microscopy | 3.70 | X | 8-96 | [»] | |
6QNQ | X-ray | 3.50 | F5/J8 | 1-96 | [»] | |
6QNR | X-ray | 3.10 | F5/J8 | 1-98 | [»] | |
6UCQ | X-ray | 3.50 | 11/21 | 1-98 | [»] | |
6UO1 | X-ray | 2.95 | 11/21 | 1-98 | [»] | |
6XHV | X-ray | 2.40 | 11/21 | 1-98 | [»] | |
6XHW | X-ray | 2.50 | 11/21 | 1-98 | [»] | |
6XHX | X-ray | 2.55 | 11/21 | 1-98 | [»] | |
6XHY | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
6XQD | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
6XQE | X-ray | 3.00 | 11/21 | 1-98 | [»] | |
7JQL | X-ray | 3.00 | 11/21 | 1-98 | [»] | |
7JQM | X-ray | 3.05 | 11/21 | 1-98 | [»] | |
7LH5 | X-ray | 3.27 | B1/D1 | 1-98 | [»] | |
7MD7 | X-ray | 2.80 | 11/21 | 1-98 | [»] | |
7RQ8 | X-ray | 2.50 | 11/21 | 1-98 | [»] | |
7RQ9 | X-ray | 2.60 | 11/21 | 1-98 | [»] | |
7RQA | X-ray | 2.40 | 11/21 | 1-98 | [»] | |
7RQB | X-ray | 2.45 | 11/21 | 1-98 | [»] | |
7RQC | X-ray | 2.50 | 11/21 | 1-98 | [»] | |
7RQD | X-ray | 2.50 | 11/21 | 1-98 | [»] | |
7RQE | X-ray | 2.40 | 11/21 | 1-98 | [»] | |
AlphaFoldDBi | P60494 | |||||
SMRi | P60494 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
IntActi | P60494, 6 interactors |
STRINGi | 300852.55771424 |
Genome annotation databases
EnsemblBacteriai | BAD69865; BAD69865; BAD69865 |
GeneIDi | 3168111 |
KEGGi | ttj:TTHA0042 |
PATRICi | fig|300852.9.peg.40 |
Phylogenomic databases
eggNOGi | COG0227, Bacteria |
HOGENOMi | CLU_064548_6_0_0 |
OMAi | MAKVCEV |
Miscellaneous databases
EvolutionaryTracei | P60494 |
Family and domain databases
HAMAPi | MF_00373, Ribosomal_L28, 1 hit |
InterProi | View protein in InterPro IPR034704, L28p-like IPR026569, Ribo_L28/L24 IPR001383, Ribosomal_L28 |
Pfami | View protein in Pfam PF00830, Ribosomal_L28, 1 hit |
SUPFAMi | SSF143800, SSF143800, 1 hit |
TIGRFAMsi | TIGR00009, L28, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RL28_THET8 | |
Accessioni | P60494Primary (citable) accession number: P60494 Secondary accession number(s): Q5SMA1 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 1, 2004 |
Last sequence update: | January 23, 2007 | |
Last modified: | May 25, 2022 | |
This is version 139 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families