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Protein

WD repeat and HMG-box DNA-binding protein 1

Gene

Wdhd1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi1004 – 1073HMG boxPROSITE-ProRule annotationAdd BLAST70

GO - Molecular functioni

  • chromatin binding Source: MGI
  • DNA binding Source: UniProtKB-KW
  • RNA binding Source: MGI
  • RNA polymerase binding Source: MGI

GO - Biological processi

  • heterochromatin maintenance Source: MGI
  • regulation of chromosome organization Source: MGI
  • RNA processing Source: MGI

Keywordsi

Molecular functionDNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
WD repeat and HMG-box DNA-binding protein 1
Alternative name(s):
Acidic nucleoplasmic DNA-binding protein 1
Short name:
And-1
Gene namesi
Name:Wdhd1
Synonyms:And1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 14

Organism-specific databases

MGIiMGI:2443514 Wdhd1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000513391 – 1117WD repeat and HMG-box DNA-binding protein 1Add BLAST1117

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei333PhosphoserineBy similarity1
Modified residuei377PhosphoserineCombined sources1
Cross-linki390Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei664N6-acetyllysineCombined sources1
Modified residuei819PhosphothreonineCombined sources1
Modified residuei821PhosphoserineCombined sources1
Modified residuei910PhosphoserineBy similarity1
Modified residuei923PhosphoserineBy similarity1
Modified residuei953N6-acetyllysineBy similarity1
Modified residuei1030PhosphoserineBy similarity1
Cross-linki1116Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternateBy similarity
Cross-linki1116Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternateBy similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP59328
MaxQBiP59328
PaxDbiP59328
PeptideAtlasiP59328
PRIDEiP59328

PTM databases

iPTMnetiP59328
PhosphoSitePlusiP59328

Expressioni

Gene expression databases

BgeeiENSMUSG00000037572 Expressed in 202 organ(s), highest expression level in ear vesicle
CleanExiMM_WDHD1
ExpressionAtlasiP59328 baseline and differential
GenevisibleiP59328 MM

Interactioni

Subunit structurei

Interacts with the polymerase alpha catalytic subunit POLA1. Interacts with MCM10. Interacts with DNA2 (By similarity).By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000107421

Structurei

3D structure databases

ProteinModelPortaliP59328
SMRiP59328
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati11 – 50WD 1Add BLAST40
Repeati52 – 91WD 2Add BLAST40
Repeati93 – 131WD 3Add BLAST39
Repeati134 – 173WD 4Add BLAST40
Repeati184 – 223WD 5Add BLAST40
Repeati228 – 267WD 6Add BLAST40
Repeati271 – 310WD 7Add BLAST40

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiKOG1274 Eukaryota
ENOG410XSJV LUCA
GeneTreeiENSGT00390000002030
HOGENOMiHOG000015160
HOVERGENiHBG074190
InParanoidiP59328
KOiK11274
OMAiVIFGSEK
PhylomeDBiP59328

Family and domain databases

Gene3Di1.10.30.10, 1 hit
2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR024977 Apc4_WD40_dom
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR022100 Mcl1_mid
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF12894 ANAPC4_WD40, 1 hit
PF00505 HMG_box, 1 hit
PF12341 Mcl1_mid, 1 hit
PF00400 WD40, 2 hits
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SM00320 WD40, 5 hits
SUPFAMiSSF47095 SSF47095, 1 hit
SSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 3 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequences (3+)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P59328-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MPATQKPMRY GHTEGHTEVC FDDSGSYIVT CGSDGDVRMW EDLDDDDPKS
60 70 80 90 100
VNVGEKAFSC ALKNGKLVTA VSNNTVQVYT FPEGVPDGIL TRFTTNANHV
110 120 130 140 150
VFNGAGNKIA AGSSDFLVKV VDVMDNSQQQ TFRGHDAPVL SLSFDPKDIF
160 170 180 190 200
LASASCDGTV RVWNISDQTC AVSWPVLQKS NDVVNAKSIC RLAWQPKAGK
210 220 230 240 250
LLAVPVEKSV KLYRRETWSN PFDLSDSSIS QTLNIVTWSP CGQYLAAGAI
260 270 280 290 300
NGLIVVWNVE TKDCMERVKH EKGYAICGLA WHPTCSRICY TDVEGNLGVL
310 320 330 340 350
ENVCDLSGKV SSNKVSSRVE KDYNDLFDGD DTSSAGDFLN DNAVEIPSFS
360 370 380 390 400
KGIINEDDDN DDIMLAADHD LGDDENSVDV TMLKADLSHK EEGDDDQARS
410 420 430 440 450
IHNLPLIRPQ RPFYDGPMPT PRQKPFQSSS TPLHLSHRFM VWNSVGIIRC
460 470 480 490 500
YNDDQDSAID VEFHDTSIHH ATHLLNAFNY TMGTLSHEAI LLACESADEL
510 520 530 540 550
ASKLHCLHFS SWDSSKEWMV DMPQNEDIEA ICLGLGWAAA ATTALLLRLF
560 570 580 590 600
TIGGVQKEVF CLPGPVVSMA GHGEQLCIVY HRGTGFDGDQ CLGVQLLELG
610 620 630 640 650
RKKNQVLHGD PLPLTRKSYL TWLGFSAEGT PCYVDSEGCV RMLNRGLGNT
660 670 680 690 700
WTPVCNIREH CKGKSDHYWV VGIHENPQQL RCIPCKGSRF PPTLPRPAVA
710 720 730 740 750
ILSFKLPYCQ TSTEKGQMEE QFWHSVLFHN YLDYLAKNGY DYEESIKNQA
760 770 780 790 800
VKEQQELLMK MLALSCKLER EFRCVELADL MTQNAVHLAI KYASRSRKLI
810 820 830 840 850
LAQKLSELAA EKAAELAETQ SEEEKEEDFR EKLNAGYSHT TTEWSRPRVR
860 870 880 890 900
SQVEDAEDRE DTVSEEKPES HNHGQNLFQS ANSSDTPALK SGAVFSSSQG
910 920 930 940 950
WVNPFKVVVS SKEPAVSANS TRSANILDSM NKSSRKSTSL NRMENNEKSP
960 970 980 990 1000
VIKPLTPKPR SKQASAASYF QKRTPQADKT EEVKENPKSS SSDAPAVCLQ
1010 1020 1030 1040 1050
NSENQRPKTG FQMWLEENRS QILSDNPDIS DETDIIKEGM IRFRVLSAEE
1060 1070 1080 1090 1100
RKAWTNKAKG ETASDGAEAK KRKRVVSEIC ETENQEETVK ENLDLSKKQK
1110
ALNLPANQKL SAFAFKQ
Length:1,117
Mass (Da):124,254
Last modified:January 10, 2006 - v2
Checksum:i01F80C3012B39EA7
GO
Isoform 2 (identifier: P59328-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     630-641: TPCYVDSEGCVR → KIIFFLYIKDIF
     642-1117: Missing.

Note: No experimental confirmation available.
Show »
Length:641
Mass (Da):70,637
Checksum:iC39755D52BE86DF0
GO
Isoform 3 (identifier: P59328-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     314-350: Missing.

Note: No experimental confirmation available.
Show »
Length:1,080
Mass (Da):120,217
Checksum:i07C387828084F8ED
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0R4J1F8A0A0R4J1F8_MOUSE
WD repeat and HMG-box DNA-binding p...
Wdhd1
1,081Annotation score:
A0A2K6EDP7A0A2K6EDP7_MOUSE
WD repeat and HMG-box DNA-binding p...
Wdhd1
1,118Annotation score:
A0A2I3BQ38A0A2I3BQ38_MOUSE
WD repeat and HMG-box DNA-binding p...
Wdhd1
67Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti54G → V in BAC29408 (PubMed:16141072).Curated1
Sequence conflicti350S → P in BAC29408 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_016898314 – 350Missing in isoform 3. 1 PublicationAdd BLAST37
Alternative sequenceiVSP_006757630 – 641TPCYV…EGCVR → KIIFFLYIKDIF in isoform 2. 1 PublicationAdd BLAST12
Alternative sequenceiVSP_006758642 – 1117Missing in isoform 2. 1 PublicationAdd BLAST476

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC063740 mRNA Translation: AAH63740.1
AK036390 mRNA Translation: BAC29408.1
AK052690 mRNA Translation: BAC35097.1
RefSeqiNP_766186.2, NM_172598.3
UniGeneiMm.265615

Genome annotation databases

EnsembliENSMUST00000111790; ENSMUSP00000107420; ENSMUSG00000037572 [P59328-2]
GeneIDi218973
KEGGimmu:218973
UCSCiuc007thu.2 mouse [P59328-3]
uc007thv.2 mouse [P59328-1]
uc007thw.2 mouse [P59328-2]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC063740 mRNA Translation: AAH63740.1
AK036390 mRNA Translation: BAC29408.1
AK052690 mRNA Translation: BAC35097.1
RefSeqiNP_766186.2, NM_172598.3
UniGeneiMm.265615

3D structure databases

ProteinModelPortaliP59328
SMRiP59328
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000107421

PTM databases

iPTMnetiP59328
PhosphoSitePlusiP59328

Proteomic databases

EPDiP59328
MaxQBiP59328
PaxDbiP59328
PeptideAtlasiP59328
PRIDEiP59328

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000111790; ENSMUSP00000107420; ENSMUSG00000037572 [P59328-2]
GeneIDi218973
KEGGimmu:218973
UCSCiuc007thu.2 mouse [P59328-3]
uc007thv.2 mouse [P59328-1]
uc007thw.2 mouse [P59328-2]

Organism-specific databases

CTDi11169
MGIiMGI:2443514 Wdhd1

Phylogenomic databases

eggNOGiKOG1274 Eukaryota
ENOG410XSJV LUCA
GeneTreeiENSGT00390000002030
HOGENOMiHOG000015160
HOVERGENiHBG074190
InParanoidiP59328
KOiK11274
OMAiVIFGSEK
PhylomeDBiP59328

Miscellaneous databases

PROiPR:P59328
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000037572 Expressed in 202 organ(s), highest expression level in ear vesicle
CleanExiMM_WDHD1
ExpressionAtlasiP59328 baseline and differential
GenevisibleiP59328 MM

Family and domain databases

Gene3Di1.10.30.10, 1 hit
2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR024977 Apc4_WD40_dom
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR022100 Mcl1_mid
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF12894 ANAPC4_WD40, 1 hit
PF00505 HMG_box, 1 hit
PF12341 Mcl1_mid, 1 hit
PF00400 WD40, 2 hits
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SM00320 WD40, 5 hits
SUPFAMiSSF47095 SSF47095, 1 hit
SSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 3 hits
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiWDHD1_MOUSE
AccessioniPrimary (citable) accession number: P59328
Secondary accession number(s): Q6P408
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 22, 2003
Last sequence update: January 10, 2006
Last modified: September 12, 2018
This is version 129 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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