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Entry version 161 (02 Dec 2020)
Sequence version 2 (23 Jan 2007)
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Protein

Histone H3.2

Gene

HTR2

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Caution

To ensure consistency between histone entries, we follow the 'Brno' nomenclature for histone modifications, with positions referring to those used in the literature for the 'closest' model organism. Due to slight variations in histone sequences between organisms and to the presence of initiator methionine in UniProtKB/Swiss-Prot sequences, the actual positions of modified amino acids in the sequence generally differ. In this entry the following conventions are used: H3K4me1/2/3 = mono-, di- and trimethylated Lys-5; H3K9me1/2/3 = mono-, di- and trimethylated Lys-10; H3K9ac = acetylated Lys-10; H3S10ph = phosphorylated Ser-11; H3T11ph = phosphorylated Thr-12; H3K14ac = acetylated Lys-15; H3K18ac = acetylated Lys-19; H3K18me1 = monomethylated Lys-19; H3K23ac = acetylated Lys-24; H3K23me1 = monomethylated Lys-24; H3K27me1/2/3 = mono-, di- and trimethylated Lys-28; H3S28ph = phosphorylated Ser-29; H3K36me1/2/3 = mono-, di- and trimethylated Lys-37.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei32Recognition by ATXR5 and ATXR61 Publication1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Histone H3.2
Alternative name(s):
Histone H3.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:HTR2
Ordered Locus Names:At1g09200
ORF Names:T12M4.9
AND
Name:HTR3
Ordered Locus Names:At3g27360
ORF Names:K1G2.8
AND
Name:HTR13
Ordered Locus Names:At5g10390
ORF Names:F12B17_260
AND
Name:HTR9
Ordered Locus Names:At5g10400
ORF Names:F12B17_250
AND
Name:HTR1
Ordered Locus Names:At5g65360
ORF Names:MNA5.9
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 1, Chromosome 3, Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G09200
AT3G27360
AT5G10390
AT5G10400
AT5G65360

The Arabidopsis Information Resource

More...
TAIRi
locus:2086696, AT3G27360
locus:2142424, AT5G10400
locus:2142439, AT5G10390
locus:2168277, AT5G65360
locus:2195341, AT1G09200

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chromosome, Nucleosome core, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002212671 – 136Histone H3.2Add BLAST136

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei5N6,N6,N6-trimethyllysine; alternate4 Publications1
Modified residuei5N6,N6-dimethyllysine; alternate4 Publications1
Modified residuei5N6-methyllysine; alternate4 Publications1
Modified residuei10N6,N6,N6-trimethyllysine; alternate5 Publications1
Modified residuei10N6,N6-dimethyllysine; alternate5 Publications1
Modified residuei10N6-acetyllysine; alternate3 Publications1
Modified residuei10N6-methyllysine; alternate5 Publications1
Modified residuei11Phosphoserine2 Publications1
Modified residuei12Phosphothreonine1 Publication1
Modified residuei15N6-acetyllysine4 Publications1
Modified residuei19N6-acetyllysine; alternate3 Publications1
Modified residuei19N6-methyllysine; alternate1 Publication1
Modified residuei24N6-acetyllysine; alternate2 Publications1
Modified residuei24N6-methyllysine; alternate1 Publication1
Modified residuei28N6,N6,N6-trimethyllysine; alternate6 Publications1
Modified residuei28N6,N6-dimethyllysine; alternate6 Publications1
Modified residuei28N6-methyllysine; alternate6 Publications1
Modified residuei29Phosphoserine2 Publications1
Modified residuei37N6,N6,N6-trimethyllysine; alternate2 Publications1
Modified residuei37N6,N6-dimethyllysine; alternate2 Publications1
Modified residuei37N6-methyllysine; alternate2 Publications1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Can be acetylated to form H3K9ac, H3K14ac, H3K18ac and H3K23ac. H3K9ac could compete with H3K9me and prevent gene silencing. H3K9acK14ac molecules are 30-fold less abundant than H3K9ac or H3K14ac. Very low level of H3K9meK14ac. H3K14 is specifically acetylated by HAG1 and deacetylated by HDA6. H3K9ac is deacetylated by HDT1. H3K9ac is restricted to euchromatin. H3K18ac, but not H3K9ac, is cell-cycle dependent and linked to replication. Reduced H4R3me2s increases H3K14ac in the FLC chromatin and activates or maintains its transcription. Vernalization decreases H3K9/14ac in the promoter region of FLC.5 Publications
Mono-, di- or trimethylated to form mainly H3K4me1/2/3, H3K9me1/2/3, H3K27me1/2/3 and H3K36me1/2/3. Very low monomethylation at H3K18me1 or H3K23me1. H3K4me1/2/3, H3K9me3, H3K27me3 and H3K36me1/2/3 are typical marks for euchromatin, whereas heterochromatic chromocenters are enriched in H3K9me1/2 and H3K27me1/2. H3K27me3 is largely restricted to the transcribed regions of single genes and not associated with low-nucleosome density regions. SUVR1 to SUVR5, ASHH1 to ASHH3, ASHR1 to ASHR3, and ATXR5 and ATXR6 methylate H3, with ASHH2 methylating specifically H3K4 and H3K36 and ATXR5 and ATXR6 monomethylating specifically H3K27me1. The Su(var)3-9 homolog proteins (SUVH1 to SUVH10) are H3K9-specific methyltransferases. Among them, KRYPTONITE (SUVH4) is only involved in di- or trimethylation. Regarding H3K9, the major forms are H3K9me1 (20%) and H3K9me2 (10%), while H3K9me3 is rare (0.2%). H3K9me is controlled by DNA methylation and is not required for the formation of constitutive heterochromatin, but double methylation H3K9meK27me is required for the recruitment of CMT3 to methylate heterochromatin and silence euchromatic loci. Very low level of H3K9meK14ac. 60% of H3K27 is found under the form of H3K27me1, 16% of H3K27me2 and 5% of H3K27me3. When associated with H3K27me, H3K36 can only be mono- or di-methylated. H327me2K36me1 or H3K27me1K36me2 are both found in 3% of the proteins. When not associated with H3K27me, H3K36 is only trimethylated. H3K36me3 is found in 3% of the proteins. H2BK143ub1 is probably prerequisite for H3K4me. Elevated H3K4me3 and H3K36me2 formed by ASHH2 are required for high FLC expression. Vernalization increases H3K9me2 and H3K27me2/3 and decreases H3K4me2 at the FLC locus, resulting in the epigenetic silencing of this floral repressor.11 Publications
In meta- and anaphase, H3T11ph is found on the entire length of the condensed chromosomes, whereas H3S10ph and H3S28ph are confined to the pericentromeric regions. During the first meiotic division, H3S10ph and H3S28ph are found on the entire length of the chromosome. Both sites may be involved in sister chromatid cohesion. No phosphorylation detected during interphase. AUR1 and AUR2 phosphorylate only H3S10, while AUR3 phosphorylates both H3S10 and H3S28.2 Publications

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei15Not N6-methylated1 Publication1
Sitei28Not N6-acetylated1 Publication1
Sitei37Not N6-acetylated1 Publication1

Keywords - PTMi

Acetylation, Methylation, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
P59226

PRoteomics IDEntifications database

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PRIDEi
P59226

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
222343

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
P59226

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in inflorescences, buds and seedlings.1 Publication

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed during the S phase.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
P59226, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
P59226, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA. The H3K9meK27me dimethylated N-terminal tail of histone H3 can directly interact with the chromodomains of CMT3 and/or LHP1.

Interacts with ORTH2.

Interacts (via N-terminus) with ATXR5 and ATXR6 (via PHD domain).

4 Publications

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
21903, 8 interactors
22681, 6 interactors

Database of interacting proteins

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DIPi
DIP-48531N

Protein interaction database and analysis system

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IntActi
P59226, 2 interactors

STRING: functional protein association networks

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STRINGi
3702.AT5G65360.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1136
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
P59226

Database of comparative protein structure models

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ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the histone H3 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG1745, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
CLU_078295_4_0_1

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
P59226

Identification of Orthologs from Complete Genome Data

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OMAi
FTTQMAR

Database of Orthologous Groups

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OrthoDBi
1564596at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
P59226

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.10.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR009072, Histone-fold
IPR007125, Histone_H2A/H2B/H3
IPR000164, Histone_H3/CENP-A

The PANTHER Classification System

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PANTHERi
PTHR11426, PTHR11426, 1 hit

Pfam protein domain database

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Pfami
View protein in Pfam
PF00125, Histone, 1 hit

Protein Motif fingerprint database; a protein domain database

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PRINTSi
PR00622, HISTONEH3

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00428, H3, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF47113, SSF47113, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS00322, HISTONE_H3_1, 1 hit
PS00959, HISTONE_H3_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P59226-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RFRPGTVALR
60 70 80 90 100
EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSSAV AALQEAAEAY
110 120 130
LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
Length:136
Mass (Da):15,268
Last modified:January 23, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF1FB03A849777A61
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
M35387 Genomic DNA Translation: AAA79889.1
M17131 Genomic DNA Translation: AAA32809.1
M17130 Genomic DNA Translation: AAA32808.1
AC003114 Genomic DNA Translation: AAC24084.1
AB024028 Genomic DNA Translation: BAA95712.1
AL353995 Genomic DNA Translation: CAB89403.1
AL353995 Genomic DNA Translation: CAB89404.1
AB011479 Genomic DNA Translation: BAB11558.1
CP002684 Genomic DNA Translation: AEE28413.1
CP002686 Genomic DNA Translation: AEE77308.1
CP002688 Genomic DNA Translation: AED91535.1
CP002688 Genomic DNA Translation: AED91536.1
CP002688 Genomic DNA Translation: AED98043.1
AK117157 mRNA Translation: BAC41835.1
AF370577 mRNA Translation: AAK49583.1
AY037250 mRNA Translation: AAK59851.1
AY039904 mRNA Translation: AAK64008.1
AY077654 mRNA Translation: AAL76132.1
AY081741 mRNA Translation: AAL87394.1
BT003051 mRNA Translation: AAO23616.1
BT003162 mRNA Translation: AAO24594.1
BT005805 mRNA Translation: AAO64207.1
BT006068 mRNA Translation: AAP04053.1
AY084316 mRNA Translation: AAM60903.1

Protein sequence database of the Protein Information Resource

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PIRi
S06250

NCBI Reference Sequences

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RefSeqi
NP_189372.1, NM_113651.2
NP_201339.1, NM_125934.2
NP_563838.1, NM_100790.3
NP_568227.1, NM_121077.3
NP_568228.1, NM_121078.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G09200.1; AT1G09200.1; AT1G09200
AT3G27360.1; AT3G27360.1; AT3G27360
AT5G10390.1; AT5G10390.1; AT5G10390
AT5G10400.1; AT5G10400.1; AT5G10400
AT5G65360.1; AT5G65360.1; AT5G65360

Database of genes from NCBI RefSeq genomes

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GeneIDi
822357
830903
830904
836661
837440

Gramene; a comparative resource for plants

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Gramenei
AT1G09200.1; AT1G09200.1; AT1G09200
AT3G27360.1; AT3G27360.1; AT3G27360
AT5G10390.1; AT5G10390.1; AT5G10390
AT5G10400.1; AT5G10400.1; AT5G10400
AT5G65360.1; AT5G65360.1; AT5G65360

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT1G09200
ath:AT3G27360
ath:AT5G10390
ath:AT5G10400
ath:AT5G65360

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M35387 Genomic DNA Translation: AAA79889.1
M17131 Genomic DNA Translation: AAA32809.1
M17130 Genomic DNA Translation: AAA32808.1
AC003114 Genomic DNA Translation: AAC24084.1
AB024028 Genomic DNA Translation: BAA95712.1
AL353995 Genomic DNA Translation: CAB89403.1
AL353995 Genomic DNA Translation: CAB89404.1
AB011479 Genomic DNA Translation: BAB11558.1
CP002684 Genomic DNA Translation: AEE28413.1
CP002686 Genomic DNA Translation: AEE77308.1
CP002688 Genomic DNA Translation: AED91535.1
CP002688 Genomic DNA Translation: AED91536.1
CP002688 Genomic DNA Translation: AED98043.1
AK117157 mRNA Translation: BAC41835.1
AF370577 mRNA Translation: AAK49583.1
AY037250 mRNA Translation: AAK59851.1
AY039904 mRNA Translation: AAK64008.1
AY077654 mRNA Translation: AAL76132.1
AY081741 mRNA Translation: AAL87394.1
BT003051 mRNA Translation: AAO23616.1
BT003162 mRNA Translation: AAO24594.1
BT005805 mRNA Translation: AAO64207.1
BT006068 mRNA Translation: AAP04053.1
AY084316 mRNA Translation: AAM60903.1
PIRiS06250
RefSeqiNP_189372.1, NM_113651.2
NP_201339.1, NM_125934.2
NP_563838.1, NM_100790.3
NP_568227.1, NM_121077.3
NP_568228.1, NM_121078.3

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4FT2X-ray3.20P2-16[»]
4FT4X-ray2.70P/Q2-33[»]
4IURX-ray2.50C2-16[»]
4IUTX-ray2.70C2-16[»]
4IUUX-ray2.70C2-16[»]
4IUVX-ray2.80C2-16[»]
5HH7X-ray1.90P2-16[»]
5VAHX-ray2.40C/D22-36[»]
5VBCX-ray2.10C/D24-37[»]
5YC3X-ray2.60P2-10[»]
5YC4X-ray2.70P2-10[»]
5YKOX-ray2.90P2-11[»]
5YVXX-ray1.59C2-10[»]
5Z8LX-ray2.00P21-36[»]
5Z8NX-ray3.10P/Q/R2-16[»]
5ZNPX-ray2.80P/Q2-16[»]
5ZNRX-ray3.20P/Q21-37[»]
5ZWXX-ray1.90P/Q2-16[»]
6IP4X-ray2.60B25-36[»]
6LQEX-ray1.90P2-16[»]
6LQFX-ray1.50P2-16[»]
SMRiP59226
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi21903, 8 interactors
22681, 6 interactors
DIPiDIP-48531N
IntActiP59226, 2 interactors
STRINGi3702.AT5G65360.1

PTM databases

iPTMnetiP59226

Proteomic databases

PaxDbiP59226
PRIDEiP59226
ProteomicsDBi222343

Genome annotation databases

EnsemblPlantsiAT1G09200.1; AT1G09200.1; AT1G09200
AT3G27360.1; AT3G27360.1; AT3G27360
AT5G10390.1; AT5G10390.1; AT5G10390
AT5G10400.1; AT5G10400.1; AT5G10400
AT5G65360.1; AT5G65360.1; AT5G65360
GeneIDi822357
830903
830904
836661
837440
GrameneiAT1G09200.1; AT1G09200.1; AT1G09200
AT3G27360.1; AT3G27360.1; AT3G27360
AT5G10390.1; AT5G10390.1; AT5G10390
AT5G10400.1; AT5G10400.1; AT5G10400
AT5G65360.1; AT5G65360.1; AT5G65360
KEGGiath:AT1G09200
ath:AT3G27360
ath:AT5G10390
ath:AT5G10400
ath:AT5G65360

Organism-specific databases

AraportiAT1G09200
AT3G27360
AT5G10390
AT5G10400
AT5G65360
TAIRilocus:2086696, AT3G27360
locus:2142424, AT5G10400
locus:2142439, AT5G10390
locus:2168277, AT5G65360
locus:2195341, AT1G09200

Phylogenomic databases

eggNOGiKOG1745, Eukaryota
HOGENOMiCLU_078295_4_0_1
InParanoidiP59226
OMAiFTTQMAR
OrthoDBi1564596at2759
PhylomeDBiP59226

Miscellaneous databases

Protein Ontology

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PROi
PR:P59226

Gene expression databases

ExpressionAtlasiP59226, baseline and differential
GenevisibleiP59226, AT

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR009072, Histone-fold
IPR007125, Histone_H2A/H2B/H3
IPR000164, Histone_H3/CENP-A
PANTHERiPTHR11426, PTHR11426, 1 hit
PfamiView protein in Pfam
PF00125, Histone, 1 hit
PRINTSiPR00622, HISTONEH3
SMARTiView protein in SMART
SM00428, H3, 1 hit
SUPFAMiSSF47113, SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00322, HISTONE_H3_1, 1 hit
PS00959, HISTONE_H3_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiH32_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P59226
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: January 23, 2007
Last modified: December 2, 2020
This is version 161 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
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