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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciHPY:HP0084-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:HP_0084
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337391 – 14150S ribosomal protein L13Add BLAST141

Proteomic databases

PaxDbiP56038

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

DIPiDIP-3161N
IntActiP56038, 2 interactors
MINTiP56038
STRINGi85962.HP0084

Structurei

3D structure databases

ProteinModelPortaliP56038
SMRiP56038
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
KOiK02871
OMAiVLMGKHK

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

P56038-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG
60 70 80 90 100
DFVVVINANK VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY
110 120 130 140
HLAVRGMLPK TKLGKAMIKK LKVYRDDKHP HTAQTSKKDA K
Length:141
Mass (Da):16,112
Last modified:November 1, 1997 - v1
Checksum:iE3BA1AD0AE0F3725
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA Translation: AAD07154.1
PIRiD64530
RefSeqiNP_206884.1, NC_000915.1
WP_000167671.1, NC_018939.1

Genome annotation databases

EnsemblBacteriaiAAD07154; AAD07154; HP_0084
GeneIDi898946
KEGGiheo:C694_00410
hpy:HP0084
PATRICifig|85962.47.peg.90

Similar proteinsi

Entry informationi

Entry nameiRL13_HELPY
AccessioniPrimary (citable) accession number: P56038
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 28, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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