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Protein

40S ribosomal protein S9

Gene

RpS9

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • positive regulation of translational fidelity Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DME-72649 Translation initiation complex formation
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-DME-72702 Ribosomal scanning and start codon recognition
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S9
Gene namesi
Name:RpS9Imported
ORF Names:CG3395Imported
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3L

Organism-specific databases

FlyBaseiFBgn0010408 RpS9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001326951 – 19540S ribosomal protein S9Add BLAST195

Proteomic databases

PaxDbiP55935
PRIDEiP55935

Expressioni

Developmental stagei

Expressed both maternally and zygotically throughout development.1 Publication

Gene expression databases

BgeeiFBgn0010408
ExpressionAtlasiP55935 baseline and differential
GenevisibleiP55935 DM

Interactioni

Protein-protein interaction databases

BioGridi64500, 26 interactors
IntActiP55935, 4 interactors
MINTiP55935
STRINGi7227.FBpp0076152

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00AJ1-195[»]
ProteinModelPortaliP55935
SMRiP55935
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini109 – 183S4 RNA-bindingPROSITE-ProRule annotationAdd BLAST75

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3301 Eukaryota
COG0522 LUCA
GeneTreeiENSGT00550000074829
InParanoidiP55935
KOiK02997
OMAiTHGHIAI
OrthoDBiEOG091G0S57
PhylomeDBiP55935

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR005710 Ribosomal_S4/S9_euk/arc
IPR001912 Ribosomal_S4/S9_N
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PANTHERiPTHR11831 PTHR11831, 1 hit
PfamiView protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM01390 Ribosomal_S4, 1 hit
SM00363 S4, 1 hit
TIGRFAMsiTIGR01018 uS4_arch, 1 hit
PROSITEiView protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

P55935-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNGRIPSVF SKTYVTPRRP YEKARLDQEL KIIGEYGLRN KREVWRVKYA
60 70 80 90 100
LAKIRKAARE LLTLDEKDEK RLFQGNALLR RLVRIGVLDE SRMKLDYVLG
110 120 130 140 150
LKIEDFLERR LQTQVFKLGL AKSIHHARVL IRQRHIRVRK QVVNIPSFVV
160 170 180 190
RLDSQKHIDF SLKSPFGGGR PGRVKRKNLK KNQGGGGGAA EEEED
Length:195
Mass (Da):22,623
Last modified:March 1, 2005 - v2
Checksum:i7619DFAEF8B4157F
GO

Sequence cautioni

The sequence CAB41492 differs from that shown. Reason: Frameshift at positions 39, 47, 90, 91, 119, 135, 145, 151, 157, 159, 165 and 180.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti57A → V in CAB41492 (PubMed:8400363).Curated1
Sequence conflicti69E → A in CAB41492 (PubMed:8400363).Curated1
Sequence conflicti76 – 79NALL → KSLV in CAB41492 (PubMed:8400363).Curated4
Sequence conflicti104E → Q in CAB41492 (PubMed:8400363).Curated1
Sequence conflicti138V → A in CAB41492 (PubMed:8400363).Curated1
Sequence conflicti164S → M in CAB41492 (PubMed:8400363).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X69677 mRNA Translation: CAB41492.1 Frameshift.
AE014296 Genomic DNA Translation: AAF50249.1
AE014296 Genomic DNA Translation: AAN11946.1
RefSeqiNP_001287008.1, NM_001300079.1
NP_524004.2, NM_079280.4
NP_729506.1, NM_168350.2
UniGeneiDm.6943

Genome annotation databases

EnsemblMetazoaiFBtr0076423; FBpp0076152; FBgn0010408
FBtr0076425; FBpp0076154; FBgn0010408
FBtr0342577; FBpp0309532; FBgn0010408
GeneIDi39108
KEGGidme:Dmel_CG3395

Similar proteinsi

Entry informationi

Entry nameiRS9_DROME
AccessioniPrimary (citable) accession number: P55935
Secondary accession number(s): A4V1R4
, Q6XIN2, Q9VT06, Q9VT07, Q9XZU5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: March 1, 2005
Last modified: May 23, 2018
This is version 132 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

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