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Protein

40S ribosomal protein S20

Gene

RpS20

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: InterPro
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • translation Source: UniProtKB

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DME-72649 Translation initiation complex formation
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-DME-72702 Ribosomal scanning and start codon recognition
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S20
Gene namesi
Name:RpS20
ORF Names:CG15693
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0019936 RpS20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001466871 – 12040S ribosomal protein S20Add BLAST120

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei16Phosphoserine1 Publication1
Modified residuei18Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP55828
PRIDEiP55828

PTM databases

iPTMnetiP55828

Expressioni

Tissue specificityi

Expressed ubiquitously in embryos, highest expression is in the midgut.1 Publication

Gene expression databases

BgeeiFBgn0019936
ExpressionAtlasiP55828 baseline and differential
GenevisibleiP55828 DM

Interactioni

Protein-protein interaction databases

BioGridi67437, 41 interactors
DIPiDIP-18789N
IntActiP55828, 40 interactors
STRINGi7227.FBpp0083371

Structurei

3D structure databases

ProteinModelPortaliP55828
SMRiP55828
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0900 Eukaryota
COG0051 LUCA
GeneTreeiENSGT00390000003248
InParanoidiP55828
KOiK02969
OMAiWDRYELK
OrthoDBiEOG091G0VNB
PhylomeDBiP55828

Family and domain databases

Gene3Di3.30.70.600, 1 hit
HAMAPiMF_00508 Ribosomal_S10, 1 hit
InterProiView protein in InterPro
IPR001848 Ribosomal_S10
IPR018268 Ribosomal_S10_CS
IPR027486 Ribosomal_S10_dom
IPR036838 Ribosomal_S10_dom_sf
IPR005729 Ribosomal_S10_euk/arc
PANTHERiPTHR11700 PTHR11700, 1 hit
PfamiView protein in Pfam
PF00338 Ribosomal_S10, 1 hit
PRINTSiPR00971 RIBOSOMALS10
SMARTiView protein in SMART
SM01403 Ribosomal_S10, 1 hit
SUPFAMiSSF54999 SSF54999, 1 hit
TIGRFAMsiTIGR01046 uS10_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00361 RIBOSOMAL_S10, 1 hit

Sequencei

Sequence statusi: Complete.

P55828-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAPKDIEK PHVGDSASVH RIRITLTSRN VRSLENVCRD LINGAKNQNL
60 70 80 90 100
RVKGPVRMPT KTLRITTRKT PCGEGSKTWD RFQMRIHKRI IDLHSPSEIV
110 120
KKITSINIEP GVEVEVTIAN
Length:120
Mass (Da):13,488
Last modified:November 1, 1997 - v1
Checksum:i8810A345CA22CF04
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti21R → C in AAL48975 (PubMed:12537569).Curated1
Sequence conflicti53K → E in AAL48975 (PubMed:12537569).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11119 mRNA Translation: CAA72004.1
AE014297 Genomic DNA Translation: AAF55809.1
AY071353 mRNA Translation: AAL48975.1
AY071742 mRNA Translation: AAL49364.1
RefSeqiNP_524421.1, NM_079697.3
UniGeneiDm.2391

Genome annotation databases

EnsemblMetazoaiFBtr0083964; FBpp0083371; FBgn0019936
GeneIDi42464
KEGGidme:Dmel_CG15693

Similar proteinsi

Entry informationi

Entry nameiRS20_DROME
AccessioniPrimary (citable) accession number: P55828
Secondary accession number(s): Q8SYS0, Q9VDI4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 18, 2018
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

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