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Entry version 154 (02 Dec 2020)
Sequence version 2 (04 Dec 2007)
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Protein

Probable plasma membrane ATPase

Gene

patB

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

The plasma membrane ATPase is a hydrogen ion pump. The proton gradient it generates drives the active transport of nutrients by H+ symport. The resulting external acidification and/or internal alkinization may mediate growth responses.

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei4804-aspartylphosphate intermediateBy similarity1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi728MagnesiumBy similarity1
Metal bindingi732MagnesiumBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • ATPase activity Source: dictyBase
  • ATP binding Source: dictyBase
  • metal ion binding Source: UniProtKB-KW
  • proton-exporting ATPase activity, phosphorylative mechanism Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTranslocase
Biological processHydrogen ion transport, Ion transport, Transport
LigandATP-binding, Magnesium, Metal-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable plasma membrane ATPase (EC:7.1.2.1)
Alternative name(s):
PAT2
Proton pump
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:patB
ORF Names:DDB_G0282817
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDictyostelium discoideum (Slime mold)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44689 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAmoebozoaEvoseaEumycetozoaDictyosteliaDictyostelialesDictyosteliaceaeDictyostelium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002195 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 3, Unassembled WGS sequence

Organism-specific databases

Dictyostelium discoideum online informatics resource

More...
dictyBasei
DDB_G0282817, patB

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 212CytoplasmicSequence analysisAdd BLAST212
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei213 – 232HelicalSequence analysisAdd BLAST20
Topological domaini233 – 237ExtracellularSequence analysis5
Transmembranei238 – 258HelicalSequence analysisAdd BLAST21
Topological domaini259 – 387CytoplasmicSequence analysisAdd BLAST129
Transmembranei388 – 407HelicalSequence analysisAdd BLAST20
Topological domaini408 – 425ExtracellularSequence analysisAdd BLAST18
Transmembranei426 – 447HelicalSequence analysisAdd BLAST22
Topological domaini448 – 783CytoplasmicSequence analysisAdd BLAST336
Transmembranei784 – 805HelicalSequence analysisAdd BLAST22
Topological domaini806 – 810ExtracellularSequence analysis5
Transmembranei811 – 833HelicalSequence analysisAdd BLAST23
Topological domaini834 – 849CytoplasmicSequence analysisAdd BLAST16
Transmembranei850 – 870HelicalSequence analysisAdd BLAST21
Topological domaini871 – 889ExtracellularSequence analysisAdd BLAST19
Transmembranei890 – 910HelicalSequence analysisAdd BLAST21
Topological domaini911 – 922CytoplasmicSequence analysisAdd BLAST12
Transmembranei923 – 943HelicalSequence analysisAdd BLAST21
Topological domaini944 – 967ExtracellularSequence analysisAdd BLAST24
Transmembranei968 – 988HelicalSequence analysisAdd BLAST21
Topological domaini989 – 1058CytoplasmicSequence analysisAdd BLAST70

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000462951 – 1058Probable plasma membrane ATPaseAdd BLAST1058

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P54679

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
44689.DDB0214946

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P54679

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi44 – 55Poly-GlnAdd BLAST12
Compositional biasi113 – 116Poly-Ser4
Compositional biasi246 – 249Poly-Leu4

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0205, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002360_6_4_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P54679

Identification of Orthologs from Complete Genome Data

More...
OMAi
FVGWYQE

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P54679

Family and domain databases

Conserved Domains Database

More...
CDDi
cd02076, P-type_ATPase_H, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.1110.10, 1 hit
3.40.50.1000, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004014, ATPase_P-typ_cation-transptr_N
IPR023299, ATPase_P-typ_cyto_dom_N
IPR018303, ATPase_P-typ_P_site
IPR023298, ATPase_P-typ_TM_dom_sf
IPR008250, ATPase_P-typ_transduc_dom_A_sf
IPR036412, HAD-like_sf
IPR023214, HAD_sf
IPR006534, P-type_ATPase_IIIA
IPR001757, P_typ_ATPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00690, Cation_ATPase_N, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00120, HATPASE

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00831, Cation_ATPase_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56784, SSF56784, 1 hit
SSF81653, SSF81653, 1 hit
SSF81665, SSF81665, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01647, ATPase-IIIA_H, 1 hit
TIGR01494, ATPase_P-type, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00154, ATPASE_E1_E2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P54679-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDNNQIPKNS PESSAINSAE SSPKSNVSSD VLHENHHKEQ QQLQQQLQQE
60 70 80 90 100
QQQQQLPTTP QSEPTQRVNN NEEGIEMDRI AENSNINVPS DVGESSLKTI
110 120 130 140 150
SGYPSSKNTE AGSSSSGKKE EDYNYRSTWV PKLHQELFEN PEVLESRRTK
160 170 180 190 200
QRASNYRKTL EREKEGIKPL DNILEELKAN ANGLTKAEAQ KRLEEVGPNA
210 220 230 240 250
IPDVKRYPIL EFLYFMWNPL SWTMEVAAIV SIALLDWVDF ILICALLLLN
260 270 280 290 300
ATIGFIEENT AGNAVEALKN SLVSQIRCMR DGEWVMLPSP DLVPGDVVML
310 320 330 340 350
KIGAIIPADC RVIEAEQVKI DQSSLTGESL PVTKKIGDEV YSGSAMKQGE
360 370 380 390 400
AKCVVTATGV NTFFGRAANL VQETEGHGHL QVILRNIGLF CISFIAIWVL
410 420 430 440 450
VELLVDFLGY DGYCHGVGGG RCLPLNNALV LLVGGIPIAM PTVLSVTMAI
460 470 480 490 500
GATQLSKKKA IVSRLASIEE LAAMDILCSD KTGTLTLNIL TVDEPLPVGD
510 520 530 540 550
TPKEDIVFHA FLACSEGEDQ DAIDKAISNY CRDTYPNVDY SGNEIVKHYP
560 570 580 590 600
FNPEDKKAMG LVNANGKQFK TAKGAPQIIL READNYKQVG EAVEKEIENL
610 620 630 640 650
ADRGYRALGV SVSYDAPDFK VWHFEGLIPL FDPPRHDTED TIKRALEMGV
660 670 680 690 700
SVKMITGDQL AIAKETARRL GMGGNLFTIP YLENNDLGIS EGEVIEMADG
710 720 730 740 750
FAEMWPEHKY KVVDQLQKRK HVVGMTGDGV NDAPALKKAQ IGIAVAGATD
760 770 780 790 800
AARSVSDIVL TSSGLSVIID AIISSRKIFQ RMRNYVIYSV AATVRICTTF
810 820 830 840 850
GILTVAWNFK FPTIATVIIA ILNDGTMLTI SKDRVRARNE PDQWNLFEVF
860 870 880 890 900
TMALCYGFYL VGSTIVFFAI IHDGTWFHDA INLRILTDNE LRGLIYLQVS
910 920 930 940 950
ISGLATIFVS RSQGFSYFER PGNLVIFAFV MSQIVATFIG VYGFRGYPHD
960 970 980 990 1000
SFSDNPDYPV HGTNFQGCGW GWAVCAWIWC FLWYIPMDFI KLGVTYILRG
1010 1020 1030 1040 1050
KIEPINKDAL RKIYGWFGKE IPKEATQVSH KVAEQQAKRD ALHAQETHHK

SVVTDNKV
Length:1,058
Mass (Da):117,268
Last modified:December 4, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i12D39896E92F3A9F
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAA66931 differs from that shown. Reason: Frameshift.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
X98286 mRNA Translation: CAA66931.1 Frameshift.
AAFI02000047 Genomic DNA Translation: EAL65988.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T30580

NCBI Reference Sequences

More...
RefSeqi
XP_639363.1, XM_634271.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EAL65988; EAL65988; DDB_G0282817

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
8623803

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ddi:DDB_G0282817

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X98286 mRNA Translation: CAA66931.1 Frameshift.
AAFI02000047 Genomic DNA Translation: EAL65988.1
PIRiT30580
RefSeqiXP_639363.1, XM_634271.1

3D structure databases

SMRiP54679
ModBaseiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0214946

Proteomic databases

PaxDbiP54679

Genome annotation databases

EnsemblProtistsiEAL65988; EAL65988; DDB_G0282817
GeneIDi8623803
KEGGiddi:DDB_G0282817

Organism-specific databases

dictyBaseiDDB_G0282817, patB

Phylogenomic databases

eggNOGiKOG0205, Eukaryota
HOGENOMiCLU_002360_6_4_1
InParanoidiP54679
OMAiFVGWYQE
PhylomeDBiP54679

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P54679

Family and domain databases

CDDicd02076, P-type_ATPase_H, 1 hit
Gene3Di3.40.1110.10, 1 hit
3.40.50.1000, 1 hit
InterProiView protein in InterPro
IPR004014, ATPase_P-typ_cation-transptr_N
IPR023299, ATPase_P-typ_cyto_dom_N
IPR018303, ATPase_P-typ_P_site
IPR023298, ATPase_P-typ_TM_dom_sf
IPR008250, ATPase_P-typ_transduc_dom_A_sf
IPR036412, HAD-like_sf
IPR023214, HAD_sf
IPR006534, P-type_ATPase_IIIA
IPR001757, P_typ_ATPase
PfamiView protein in Pfam
PF00690, Cation_ATPase_N, 1 hit
PRINTSiPR00120, HATPASE
SMARTiView protein in SMART
SM00831, Cation_ATPase_N, 1 hit
SUPFAMiSSF56784, SSF56784, 1 hit
SSF81653, SSF81653, 1 hit
SSF81665, SSF81665, 1 hit
TIGRFAMsiTIGR01647, ATPase-IIIA_H, 1 hit
TIGR01494, ATPase_P-type, 2 hits
PROSITEiView protein in PROSITE
PS00154, ATPASE_E1_E2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPMA1_DICDI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P54679
Secondary accession number(s): Q54RX4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: December 4, 2007
Last modified: December 2, 2020
This is version 154 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. SIMILARITY comments
    Index of protein domains and families
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