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UniProtKB - P53990 (IST1_HUMAN)

Protein

IST1 homolog

Gene

IST1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

ESCRT-III-like protein involved in specific functions of the ESCRT machinery. Is required for efficient abscission during cytokinesis, but not for HIV-1 budding. The involvement in the MVB pathway is not established. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells (PubMed:19129479, PubMed:19129480). During late anaphase, involved in nuclear envelope reassembly and mitotic spindle disassembly together with the ESCRT-III complex: IST1 acts by mediating the recruitment of SPAST to the nuclear membrane, leading to microtubule severing (PubMed:26040712). Regulates early endosomal tubulation together with the ESCRT-III complex by mediating the recruitment of SPAST (PubMed:23897888).4 Publications

GO - Molecular functioni

  • cadherin binding Source: BHF-UCL
  • identical protein binding Source: IntAct
  • MIT domain binding Source: UniProtKB
  • protein-containing complex binding Source: UniProtKB
  • protein domain specific binding Source: UniProtKB
View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

Keywordsi

Biological processCell cycle, Cell division

Enzyme and pathway databases

ReactomeiR-HSA-6798695 Neutrophil degranulation

Names & Taxonomyi

Protein namesi
Recommended name:
IST1 homolog
Short name:
hIST1
Alternative name(s):
Putative MAPK-activating protein PM28
Gene namesi
Name:IST1
Synonyms:KIAA0174
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
Proteomesi
  • UP000005640 Componenti: Chromosome 16

Organism-specific databases

EuPathDBiHostDB:ENSG00000182149.20
HGNCiHGNC:28977 IST1
MIMi616434 gene
neXtProtiNX_P53990

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Cytoskeleton, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi323L → D: Diminishes interaction with VPS4A. Greatly diminishes interaction with VPS4A; when associated with A-353. 1 Publication1
Mutagenesisi326L → D: Diminishes interaction with VPS4A. Greatly diminishes interaction with VPS4A and abolishes interaction with VTA1; when associated with A-353. Greatly diminishes interaction with VPS4A; when associated with A-360. 1 Publication1
Mutagenesisi353L → A: Diminishes interaction with VPS4A. Greatly diminishes interaction with VPS4A and abolishes interaction with VTA1; when associated with D-326. Greatly diminishes interaction with VPS4A; when associated with D-323. 1 Publication1
Mutagenesisi360 – 361LK → AA: Abolishes interaction with VTA1, MITD1 and USP8; diminishes interaction with VPS4A. 1 Publication2
Mutagenesisi360L → A: Diminishes interaction with VPS4A. Greatly diminishes interaction with VPS4A; when associated with D-326. 1 Publication1

Organism-specific databases

DisGeNETi9798
OpenTargetsiENSG00000182149
PharmGKBiPA142671633

Polymorphism and mutation databases

DMDMi1723119

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000507271 – 364IST1 homologAdd BLAST364

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei4PhosphoserineCombined sources1
Modified residuei43PhosphotyrosineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiP53990
MaxQBiP53990
PaxDbiP53990
PeptideAtlasiP53990
PRIDEiP53990
ProteomicsDBi56636
56637 [P53990-2]
56638 [P53990-3]
56639 [P53990-4]

PTM databases

iPTMnetiP53990
PhosphoSitePlusiP53990
SwissPalmiP53990

Miscellaneous databases

PMAP-CutDBiP53990

Expressioni

Gene expression databases

BgeeiENSG00000182149 Expressed in 235 organ(s), highest expression level in left lobe of thyroid gland
CleanExiHS_KIAA0174
ExpressionAtlasiP53990 baseline and differential
GenevisibleiP53990 HS

Organism-specific databases

HPAiHPA041802
HPA054532

Interactioni

Subunit structurei

Interacts with CHMP1A, CHMP1B, VPS4A and VTA1. Interacts with SPAST, STAMBP, and USP8. May interact with VPS37B. May associate with the ESCRT-I complex. Interacts with MITD1, in competition with VSP4 (PubMed:23015756). Interacts with SPART (via MIT domain); leading to the recruitment of SPART to midbodies (PubMed:20719964). Interacts with SPAST (PubMed:23897888, PubMed:26040712).6 Publications

Binary interactionsi

GO - Molecular functioni

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridi115141, 49 interactors
DIPiDIP-42546N
IntActiP53990, 31 interactors
MINTiP53990
STRINGi9606.ENSP00000330408

Structurei

Secondary structure

1364
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP53990
SMRiP53990
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP53990

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 168Interaction with CHMP1A and CHMP1BAdd BLAST168
Regioni64 – 279Interaction with VPS37B1 PublicationAdd BLAST216
Regioni190 – 364Interaction with VTA1Add BLAST175
Regioni348 – 364Interaction with VPS4A, VTA1, MITD1 STAMBP and USP81 PublicationAdd BLAST17

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi321 – 332Type-2 MIT-interacting motifAdd BLAST12
Motifi351 – 361MIT-interacting motifAdd BLAST11

Sequence similaritiesi

Belongs to the IST1 family.Curated

Phylogenomic databases

eggNOGiKOG2027 Eukaryota
ENOG410YG52 LUCA
GeneTreeiENSGT00390000007453
HOGENOMiHOG000205346
HOVERGENiHBG052171
InParanoidiP53990
KOiK19476
OMAiDTYDNFV
OrthoDBiEOG091G0CZX
PhylomeDBiP53990
TreeFamiTF314258

Family and domain databases

InterProiView protein in InterPro
IPR005061 Ist1
PANTHERiPTHR12161 PTHR12161, 1 hit
PfamiView protein in Pfam
PF03398 Ist1, 1 hit

Sequences (6+)i

Sequence statusi: Complete.

This entry describes 6 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 6 described isoforms and 10 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P53990-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MLGSGFKAER LRVNLRLVIN RLKLLEKKKT ELAQKARKEI ADYLAAGKDE 
        60         70         80         90        100
RARIRVEHII REDYLVEAME ILELYCDLLL ARFGLIQSMK ELDSGLAESV 
       110        120        130        140        150
STLIWAAPRL QSEVAELKIV ADQLCAKYSK EYGKLCRTNQ IGTVNDRLMH 
       160        170        180        190        200
KLSVEAPPKI LVERYLIEIA KNYNVPYEPD SVVMAEAPPG VETDLIDVGF 
       210        220        230        240        250
TDDVKKGGPG RGGSGGFTAP VGGPDGTVPM PMPMPMPSAN TPFSYPLPKG 
       260        270        280        290        300
PSDFNGLPMG TYQAFPNIHP PQIPATPPSY ESVDDINADK NISSAQIVGP 
       310        320        330        340        350
GPKPEASAKL PSRPADNYDN FVLPELPSVP DTLPTASAGA STSASEDIDF 
       360 
DDLSRRFEEL KKKT
Length:364
Mass (Da):39,751
Last modified:October 1, 1996 - v1
Checksum:i0DD3C186A52A4380
GO
Isoform 2 (identifier: P53990-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     228-228: V → VPM
     252-282: Missing.

Note: No experimental confirmation available.
Show »
Length:335
Mass (Da):36,622
Checksum:i7D0714269380E835
GO
Isoform 5 (identifier: P53990-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MVFKLKTKEEQHSM
     237-237: P → PMP

Show »
Length:379
Mass (Da):41,566
Checksum:i37E0FEF4BB93C054
GO
Isoform 4 (identifier: P53990-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     228-228: V → VPM

Show »
Length:366
Mass (Da):39,979
Checksum:iE25DE7D7A5693AF8
GO
Isoform 3 (identifier: P53990-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     228-228: V → VPM
     283-364: VDDINADKNI...RRFEELKKKT → MTLMLIRISL...LMIFPGGLKS

Note: No experimental confirmation available.
Show »
Length:360
Mass (Da):39,928
Checksum:i5D0DDB4113DAA2BC
GO
Isoform 6 (identifier: P53990-6) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-148: Missing.
     228-228: V → VPM

Note: No experimental confirmation available. Gene prediction based on EST data.
Show »
Length:218
Mass (Da):23,089
Checksum:iB0405956455B9777
GO

Computationally mapped potential isoform sequencesi

There are 10 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H3BRE2H3BRE2_HUMAN
IST1 homolog
IST1
105Annotation score:
H3BUI0H3BUI0_HUMAN
IST1 homolog
IST1
253Annotation score:
H3BMU1H3BMU1_HUMAN
IST1 homolog
IST1
206Annotation score:
H3BQF7H3BQF7_HUMAN
IST1 homolog
IST1
166Annotation score:
F5GXM3F5GXM3_HUMAN
IST1 homolog
IST1
141Annotation score:
H3BPP6H3BPP6_HUMAN
IST1 homolog
IST1
59Annotation score:
H3BQ38H3BQ38_HUMAN
IST1 homolog
IST1
40Annotation score:
E9PF00E9PF00_HUMAN
IST1 homolog
IST1
41Annotation score:
J3KR23J3KR23_HUMAN
IST1 homolog
IST1
289Annotation score:
J3QQP8J3QQP8_HUMAN
IST1 homolog
IST1
85Annotation score:

Sequence cautioni

The sequence BAA11491 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0551181 – 148Missing in isoform 6. CuratedAdd BLAST148
Alternative sequenceiVSP_0470751M → MVFKLKTKEEQHSM in isoform 5. 1 Publication1
Alternative sequenceiVSP_017118228V → VPM in isoform 2, isoform 3, isoform 4 and isoform 6. 2 Publications1
Alternative sequenceiVSP_047076237P → PMP in isoform 5. 1 Publication1
Alternative sequenceiVSP_017119252 – 282Missing in isoform 2. 1 PublicationAdd BLAST31
Alternative sequenceiVSP_017120283 – 364VDDIN…LKKKT → MTLMLIRISLLHRLLVLDPS QKPLQSFLPDLQITMTTLSY QSCHLCQTHYQLHLLVPAPQ HLKTLTLMIFPGGLKS in isoform 3. 1 PublicationAdd BLAST82

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB097052 mRNA Translation: BAC77405.1
D79996 mRNA Translation: BAA11491.2 Different initiation.
AK057258 mRNA Translation: BAG51894.1
AK293022 mRNA Translation: BAF85711.1
AK293040 mRNA Translation: BAF85729.1
AC009127 Genomic DNA No translation available.
AC010653 Genomic DNA No translation available.
BC000116 mRNA Translation: AAH00116.1
BC000430 mRNA Translation: AAH00430.1
BC004359 mRNA Translation: AAH04359.1
BC103745 mRNA Translation: AAI03746.1
CCDSiCCDS10905.1 [P53990-3]
CCDS59271.1 [P53990-5]
CCDS59272.1 [P53990-4]
CCDS59273.1 [P53990-2]
CCDS59274.1 [P53990-6]
RefSeqiNP_001257904.1, NM_001270975.1 [P53990-4]
NP_001257905.1, NM_001270976.1 [P53990-5]
NP_001257906.1, NM_001270977.1 [P53990-2]
NP_001257907.1, NM_001270978.1 [P53990-6]
NP_055576.2, NM_014761.3 [P53990-3]
UniGeneiHs.232194

Genome annotation databases

EnsembliENST00000329908; ENSP00000330408; ENSG00000182149 [P53990-3]
ENST00000378798; ENSP00000368075; ENSG00000182149 [P53990-2]
ENST00000378799; ENSP00000368076; ENSG00000182149 [P53990-4]
ENST00000535424; ENSP00000438399; ENSG00000182149 [P53990-5]
ENST00000538850; ENSP00000463711; ENSG00000182149 [P53990-6]
ENST00000541571; ENSP00000455860; ENSG00000182149 [P53990-4]
ENST00000544564; ENSP00000457844; ENSG00000182149 [P53990-4]
ENST00000606369; ENSP00000475853; ENSG00000182149 [P53990-6]
GeneIDi9798
KEGGihsa:9798
UCSCiuc002fbk.3 human [P53990-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB097052 mRNA Translation: BAC77405.1
D79996 mRNA Translation: BAA11491.2 Different initiation.
AK057258 mRNA Translation: BAG51894.1
AK293022 mRNA Translation: BAF85711.1
AK293040 mRNA Translation: BAF85729.1
AC009127 Genomic DNA No translation available.
AC010653 Genomic DNA No translation available.
BC000116 mRNA Translation: AAH00116.1
BC000430 mRNA Translation: AAH00430.1
BC004359 mRNA Translation: AAH04359.1
BC103745 mRNA Translation: AAI03746.1
CCDSiCCDS10905.1 [P53990-3]
CCDS59271.1 [P53990-5]
CCDS59272.1 [P53990-4]
CCDS59273.1 [P53990-2]
CCDS59274.1 [P53990-6]
RefSeqiNP_001257904.1, NM_001270975.1 [P53990-4]
NP_001257905.1, NM_001270976.1 [P53990-5]
NP_001257906.1, NM_001270977.1 [P53990-2]
NP_001257907.1, NM_001270978.1 [P53990-6]
NP_055576.2, NM_014761.3 [P53990-3]
UniGeneiHs.232194

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3FRRX-ray1.80A1-189[»]
3FRSX-ray2.61A5-189[»]
3JC1electron microscopy4.00Aa/Ac/Ae/Ag/Ai/Ak/Am/Ao/Aq/As/Au/Aw/Ay/Ba/Bc/Be/Bg/Bi/Bk/Bm/Bo/Bq/Bs/Bu/Bw/By/Ca/Cc/Ce/Cg6-187[»]
4U7EX-ray1.60A341-364[»]
4U7IX-ray1.79B341-364[»]
4U7YX-ray2.50B341-364[»]
4WZXX-ray1.39E342-364[»]
6E8Gelectron microscopy2.90A/BA/BB/C/DA/DB/E/FA/FB/G/HA/HB/I/JA/JB/K/LA/LB/M/NA/NB/O/PA/PB/Q/RA/RB/S/TA/TB1-364[»]
ProteinModelPortaliP53990
SMRiP53990
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi115141, 49 interactors
DIPiDIP-42546N
IntActiP53990, 31 interactors
MINTiP53990
STRINGi9606.ENSP00000330408

PTM databases

iPTMnetiP53990
PhosphoSitePlusiP53990
SwissPalmiP53990

Polymorphism and mutation databases

DMDMi1723119

Proteomic databases

EPDiP53990
MaxQBiP53990
PaxDbiP53990
PeptideAtlasiP53990
PRIDEiP53990
ProteomicsDBi56636
56637 [P53990-2]
56638 [P53990-3]
56639 [P53990-4]

Protocols and materials databases

DNASUi9798
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000329908; ENSP00000330408; ENSG00000182149 [P53990-3]
ENST00000378798; ENSP00000368075; ENSG00000182149 [P53990-2]
ENST00000378799; ENSP00000368076; ENSG00000182149 [P53990-4]
ENST00000535424; ENSP00000438399; ENSG00000182149 [P53990-5]
ENST00000538850; ENSP00000463711; ENSG00000182149 [P53990-6]
ENST00000541571; ENSP00000455860; ENSG00000182149 [P53990-4]
ENST00000544564; ENSP00000457844; ENSG00000182149 [P53990-4]
ENST00000606369; ENSP00000475853; ENSG00000182149 [P53990-6]
GeneIDi9798
KEGGihsa:9798
UCSCiuc002fbk.3 human [P53990-1]

Organism-specific databases

CTDi9798
DisGeNETi9798
EuPathDBiHostDB:ENSG00000182149.20
GeneCardsiIST1
HGNCiHGNC:28977 IST1
HPAiHPA041802
HPA054532
MIMi616434 gene
neXtProtiNX_P53990
OpenTargetsiENSG00000182149
PharmGKBiPA142671633
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG2027 Eukaryota
ENOG410YG52 LUCA
GeneTreeiENSGT00390000007453
HOGENOMiHOG000205346
HOVERGENiHBG052171
InParanoidiP53990
KOiK19476
OMAiDTYDNFV
OrthoDBiEOG091G0CZX
PhylomeDBiP53990
TreeFamiTF314258

Enzyme and pathway databases

ReactomeiR-HSA-6798695 Neutrophil degranulation

Miscellaneous databases

ChiTaRSiIST1 human
EvolutionaryTraceiP53990
GenomeRNAii9798
PMAP-CutDBiP53990
PROiPR:P53990
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000182149 Expressed in 235 organ(s), highest expression level in left lobe of thyroid gland
CleanExiHS_KIAA0174
ExpressionAtlasiP53990 baseline and differential
GenevisibleiP53990 HS

Family and domain databases

InterProiView protein in InterPro
IPR005061 Ist1
PANTHERiPTHR12161 PTHR12161, 1 hit
PfamiView protein in Pfam
PF03398 Ist1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiIST1_HUMAN
AccessioniPrimary (citable) accession number: P53990
Secondary accession number(s): A8KAH5
, J3QLU7, Q3SYM4, Q9BQ81, Q9BWN2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 7, 2018
This is version 158 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  4. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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