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Entry version 145 (16 Oct 2019)
Sequence version 1 (01 Oct 1996)
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Protein

Autophagy-related protein 2

Gene

ATG2

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for cytoplasm to vacuole transport (Cvt) vesicle and autophagosome completion. Necessary for the localization of ATG18 to the preautophagosomal structure (PAS) and the binding of ATG18 to ATG9. Involved in correct ATG9 trafficking through the preautophagosomal structure and in peroxisome degradation. ATG2 is the most downstream ATG protein in the preautophagosomal structure organization process. Plays a significant role in life span extension.14 Publications

Miscellaneous

Present with 876 molecules/cell in log phase SD medium.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processAutophagy, Protein transport, Transport

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
YEAST:G3O-33239-MONOMER

Protein family/group databases

Transport Classification Database

More...
TCDBi
9.A.15.1.1 the autophagy-related phagophore-formation transporter (apt) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Autophagy-related protein 2
Alternative name(s):
Sporulation-specific protein 72
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ATG2
Synonyms:APG2, AUT8, SPO72
Ordered Locus Names:YNL242W
ORF Names:N1106
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri559292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome XIV

Organism-specific databases

Eukaryotic Pathogen Database Resources

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EuPathDBi
FungiDB:YNL242W

Saccharomyces Genome Database

More...
SGDi
S000005186 ATG2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi83G → E: Leads to a severely reduced activity of autophagy and a dispersed localization in the cytoplasm. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002158361 – 1592Autophagy-related protein 2Add BLAST1592

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei236PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
P53855

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P53855

PRoteomics IDEntifications database

More...
PRIDEi
P53855

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P53855

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with ATG18.

4 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
ATG18P436015EBI-29212,EBI-22968

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
35597, 182 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-361 ATG2-ATG18 complex

Database of interacting proteins

More...
DIPi
DIP-2620N

Protein interaction database and analysis system

More...
IntActi
P53855, 5 interactors

Molecular INTeraction database

More...
MINTi
P53855

STRING: functional protein association networks

More...
STRINGi
4932.YNL242W

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
P53855

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1049 – 1075Sequence analysisAdd BLAST27

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ATG2 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000034152

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P53855

KEGG Orthology (KO)

More...
KOi
K17906

Identification of Orthologs from Complete Genome Data

More...
OMAi
WMPQNIQ

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026849 ATG2
IPR026885 ATG2_CAD_motif
IPR026886 ATG2_fungi/plants
IPR015412 Autophagy-rel_C

The PANTHER Classification System

More...
PANTHERi
PTHR13190 PTHR13190, 2 hits
PTHR13190:SF1 PTHR13190:SF1, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13329 ATG2_CAD, 1 hit
PF09333 ATG_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P53855-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAFWLPQNIQ KRLLLYVLQQ ISLFSNIDLS NLDVSIGSKS HFSFHDVNLS
60 70 80 90 100
LDDLNIPNVQ INEGIVDELV LKLTVSGGVE IDGSGLRFIM TPLYSSGSQE
110 120 130 140 150
LHSDFLVKSI QDLTNSMLQF SDPLTTYNRY KEDDISSSDS SSDLNSNIEA
160 170 180 190 200
SKPAANGSYT LQNMRNKALN VALAKLKIAL KDVTIRFIVN DRDPSDNIVE
210 220 230 240 250
VHLESIQLIT TDANLRHINI ENITISSIQK QAVPDSPVHP FNNDDLSQSV
260 270 280 290 300
YLSKMEATSL YMSAMEEQSN EDPSEPQVTQ EEQENDKCKE SLMEINNLNI
310 320 330 340 350
AFKGLSSVND LRMSNIVIDI QDVHLAIHKI VEIKNSTLKN IIDIIVTHLD
360 370 380 390 400
ANESFSCQDS QSPSPDKQEP SALSSVDIKC IYLNLGQDIT VILKSFKLEQ
410 420 430 440 450
KENNSLAFSL GSFYSNSSPL TISHKTKPLL TGEQTPQSIA LNMGDELDII
460 470 480 490 500
ISHDGIAHFF KIFQFVSKCM SFYQNKSKGM MPQIASDTKR TVQLTSKAVK
510 520 530 540 550
LSLKFPYFLL CFQVSPFIYD SNRELYIELV DVFKKLPSRC TKILTMSSIT
560 570 580 590 600
ISNLQSPLQL GSYDDTLKEA LIYSSVHAII KEVIFNEEYS GIVQLVEDIS
610 620 630 640 650
AFGKLFTDSK NSECTGKSKS KRGSFLQRSV RVLNSSRFVY KQSLSANFSL
660 670 680 690 700
KIDSMKLKVS EIIGPQFGSV EALLSNNFFA ITDDSQIVYF TKNLKVERKT
710 720 730 740 750
PSLLEPQEIM SVVLNKAVNE PVLYVHRRAN GKLKVIFNNI RIHYYARWLE
760 770 780 790 800
ILKKNIGPDN ASSKDEPVSQ KLSKKQPTSG FPWELKCLDC SLILHPFRLK
810 820 830 840 850
SVMVIVLDNL TTGGSSFIPQ AKLLSKANTL FLIDDYQNFK IQKDKNWPSL
860 870 880 890 900
INFYAGQGFS AIGKIDTLNF LINKSDGALL LDCKIEQVGL SLCADSFQTF
910 920 930 940 950
CQLCIDLKYP QTFPDEEKFR TQLKNPIDVF KDIDCDLFNS AFIRENNHQN
960 970 980 990 1000
DYDSVHLVDS FLDKTHEFNN GARSKLSSQG SYEMDSSSGT ATGGILLPHE
1010 1020 1030 1040 1050
SYLDSAQPKE EDTPPIASKE QERDVDIRGS IDVEKVVIKL FDGYDWKYTR
1060 1070 1080 1090 1100
KFIANTVEKL DKELSKAEAS SSKSNVPQSE ANIFDSIYIS ANKNNVTDLR
1110 1120 1130 1140 1150
RNLDGEIQGV QNSFSDVSKV NLRPSKHYKA LIQLNKVHVN LKNYRVDEPD
1160 1170 1180 1190 1200
ESNSDNSTDV LNRCVVSIYE FEIIDNVPTS TWNKFVTLLK HEPWPHSSPM
1210 1220 1230 1240 1250
FLLDLEFIRP IDFLQAVELV MQLNVAPLRL HVDQDTLEFL IRFLGFKDKR
1260 1270 1280 1290 1300
FELIDEYPDI VFIQKFSTNS IKLRLDYKPK KVDYAGLRSG QTSELMNFFT
1310 1320 1330 1340 1350
LDGSKIILKS VVLYGLNGFD ELNNKLKAIW TPDITKKQLP GVLEGLAPVR
1360 1370 1380 1390 1400
SFMAIGSGVK TLVTVLMSEY RQEGHLGRSL KKGGNVFLKT TTGDFVKLGV
1410 1420 1430 1440 1450
KLTSGTQAIL ENTEELFGGV GSNGRVYDAS KFGSADGADS DTAAVLDLDT
1460 1470 1480 1490 1500
LFEEDQLVGS KYSRIRDHEP TAVVIDMSSP GDHNEPTIVS LYADQPLDLP
1510 1520 1530 1540 1550
TGLKEAYSSL EKHMHIAYDA VWRAKGQMKD DKRGGPSAAA VYVARAAPVA
1560 1570 1580 1590
IIRPLIGATE AVSKTLQGIA NQVDKTHNEQ INDKYKSNRT DS
Length:1,592
Mass (Da):178,414
Last modified:October 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i54FDDF56297FFF99
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
Z69381 Genomic DNA Translation: CAA93356.1
Z71518 Genomic DNA Translation: CAA96147.1
BK006947 Genomic DNA Translation: DAA10317.1

Protein sequence database of the Protein Information Resource

More...
PIRi
S63208

NCBI Reference Sequences

More...
RefSeqi
NP_014157.1, NM_001183080.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
YNL242W_mRNA; YNL242W; YNL242W

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
855479

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sce:YNL242W

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z69381 Genomic DNA Translation: CAA93356.1
Z71518 Genomic DNA Translation: CAA96147.1
BK006947 Genomic DNA Translation: DAA10317.1
PIRiS63208
RefSeqiNP_014157.1, NM_001183080.1

3D structure databases

SMRiP53855
ModBaseiSearch...

Protein-protein interaction databases

BioGridi35597, 182 interactors
ComplexPortaliCPX-361 ATG2-ATG18 complex
DIPiDIP-2620N
IntActiP53855, 5 interactors
MINTiP53855
STRINGi4932.YNL242W

Protein family/group databases

TCDBi9.A.15.1.1 the autophagy-related phagophore-formation transporter (apt) family

PTM databases

iPTMnetiP53855

Proteomic databases

MaxQBiP53855
PaxDbiP53855
PRIDEiP53855

Genome annotation databases

EnsemblFungiiYNL242W_mRNA; YNL242W; YNL242W
GeneIDi855479
KEGGisce:YNL242W

Organism-specific databases

EuPathDBiFungiDB:YNL242W
SGDiS000005186 ATG2

Phylogenomic databases

HOGENOMiHOG000034152
InParanoidiP53855
KOiK17906
OMAiWMPQNIQ

Enzyme and pathway databases

BioCyciYEAST:G3O-33239-MONOMER

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P53855

Family and domain databases

InterProiView protein in InterPro
IPR026849 ATG2
IPR026885 ATG2_CAD_motif
IPR026886 ATG2_fungi/plants
IPR015412 Autophagy-rel_C
PANTHERiPTHR13190 PTHR13190, 2 hits
PTHR13190:SF1 PTHR13190:SF1, 2 hits
PfamiView protein in Pfam
PF13329 ATG2_CAD, 1 hit
PF09333 ATG_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiATG2_YEAST
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P53855
Secondary accession number(s): D6W0V1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: October 16, 2019
This is version 145 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Yeast chromosome XIV
    Yeast (Saccharomyces cerevisiae) chromosome XIV: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
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