UniProtKB - P52696 (YBHD_ECOLI)
Protein
Uncharacterized HTH-type transcriptional regulator YbhD
Gene
ybhD
Organism
Escherichia coli (strain K12)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 20 – 40 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 21 |
GO - Molecular functioni
- bacterial-type cis-regulatory region sequence-specific DNA binding Source: GO_Central
- DNA-binding transcription factor activity Source: InterPro
GO - Biological processi
- regulation of transcription, DNA-templated Source: GO_Central
Keywordsi
Molecular function | DNA-binding |
Biological process | Transcription, Transcription regulation |
Enzyme and pathway databases
BioCyci | EcoCyc:G6398-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Uncharacterized HTH-type transcriptional regulator YbhD |
Gene namesi | Name:ybhD Ordered Locus Names:b0768, JW5896 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000105780 | 1 – 317 | Uncharacterized HTH-type transcriptional regulator YbhDAdd BLAST | 317 |
Proteomic databases
PaxDbi | P52696 |
PRIDEi | P52696 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4261144, 2 interactors |
STRINGi | 511145.b0768 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1 – 60 | HTH lysR-typePROSITE-ProRule annotationAdd BLAST | 60 |
Sequence similaritiesi
Belongs to the LysR transcriptional regulatory family.Curated
Phylogenomic databases
eggNOGi | COG0583, Bacteria |
HOGENOMi | CLU_039613_6_0_6 |
InParanoidi | P52696 |
PhylomeDBi | P52696 |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR005119, LysR_subst-bd IPR000847, Tscrpt_reg_HTH_LysR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00126, HTH_1, 1 hit PF03466, LysR_substrate, 1 hit |
PRINTSi | PR00039, HTHLYSR |
SUPFAMi | SSF46785, SSF46785, 1 hit |
PROSITEi | View protein in PROSITE PS50931, HTH_LYSR, 1 hit |
i Sequence
Sequence statusi: Complete.
P52696-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKHELSSMKA FVILAESSSF NNAAKLLNIT QPALTRRIKK MEEDLHVQLF
60 70 80 90 100
ERTTRKVTLT KAGKRLLPEA RELIKKFDET LFNIRDMNAY HRGMVTLACI
110 120 130 140 150
PTAVFYFLPL AIGKFNELYP NIKVRILEQG TNNCMESVLC NESDFGINMN
160 170 180 190 200
NVTNSSIDFT PLVNEPFVLA CRRDHPLAKK QLVEWQELVG YKMIGVRSSS
210 220 230 240 250
GNRLLIEQQL ADKPWKLDWF YEVRHLSTSL GLVEAGLGIS ALPGLAMPHA
260 270 280 290 300
PYSSIIGIPL VEPVIRRTLG IIRRKDAVLS PAAERFFALL INLWTDDKDN
310
LWTNIVERQR HALQEIG
Sequence cautioni
The sequence BAA35432 differs from that shown. Reason: Erroneous initiation.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC73855.2 AP009048 Genomic DNA Translation: BAA35432.1 Different initiation. U27192 Genomic DNA No translation available. |
PIRi | H64812 |
RefSeqi | NP_415289.4, NC_000913.3 WP_001350493.1, NZ_LN832404.1 |
Genome annotation databases
EnsemblBacteriai | AAC73855; AAC73855; b0768 BAA35432; BAA35432; BAA35432 |
GeneIDi | 944869 |
KEGGi | ecj:JW5896 eco:b0768 |
PATRICi | fig|1411691.4.peg.1510 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U00096 Genomic DNA Translation: AAC73855.2 AP009048 Genomic DNA Translation: BAA35432.1 Different initiation. U27192 Genomic DNA No translation available. |
PIRi | H64812 |
RefSeqi | NP_415289.4, NC_000913.3 WP_001350493.1, NZ_LN832404.1 |
3D structure databases
SMRi | P52696 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 4261144, 2 interactors |
STRINGi | 511145.b0768 |
Proteomic databases
PaxDbi | P52696 |
PRIDEi | P52696 |
Genome annotation databases
EnsemblBacteriai | AAC73855; AAC73855; b0768 BAA35432; BAA35432; BAA35432 |
GeneIDi | 944869 |
KEGGi | ecj:JW5896 eco:b0768 |
PATRICi | fig|1411691.4.peg.1510 |
Organism-specific databases
EchoBASEi | EB3019 |
Phylogenomic databases
eggNOGi | COG0583, Bacteria |
HOGENOMi | CLU_039613_6_0_6 |
InParanoidi | P52696 |
PhylomeDBi | P52696 |
Enzyme and pathway databases
BioCyci | EcoCyc:G6398-MONOMER |
Miscellaneous databases
PROi | PR:P52696 |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR005119, LysR_subst-bd IPR000847, Tscrpt_reg_HTH_LysR IPR036388, WH-like_DNA-bd_sf IPR036390, WH_DNA-bd_sf |
Pfami | View protein in Pfam PF00126, HTH_1, 1 hit PF03466, LysR_substrate, 1 hit |
PRINTSi | PR00039, HTHLYSR |
SUPFAMi | SSF46785, SSF46785, 1 hit |
PROSITEi | View protein in PROSITE PS50931, HTH_LYSR, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YBHD_ECOLI | |
Accessioni | P52696Primary (citable) accession number: P52696 Secondary accession number(s): P75761 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 1, 1996 |
Last sequence update: | April 27, 2001 | |
Last modified: | April 7, 2021 | |
This is version 137 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families