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UniProtKB - P51513 (NOVA1_HUMAN)

Entry version 160 (13 Feb 2019)
Sequence version 2 (13 Feb 2019)
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Protein

RNA-binding protein Nova-1

Gene

NOVA1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May regulate RNA splicing or metabolism in a specific subset of developing neurons.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

View the complete GO annotation on QuickGO ...

GO - Biological processi

  • chemical synaptic transmission Source: ProtInc
  • locomotory behavior Source: ProtInc
  • mRNA splicing, via spliceosome Source: Ensembl
  • negative regulation of cold-induced thermogenesis Source: YuBioLab
  • regulation of RNA metabolic process Source: Ensembl
  • RNA processing Source: ProtInc
  • RNA splicing Source: ProtInc
View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA-binding protein Nova-1
Alternative name(s):
Neuro-oncological ventral antigen 1
Onconeural ventral antigen 1
Paraneoplastic Ri antigen
Ventral neuron-specific protein 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NOVA1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 14

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...EuPathDBi		HostDB:ENSG00000139910.19

Human Gene Nomenclature Database

More...HGNCi		HGNC:7886 NOVA1

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		602157 gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_P51513

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...DisGeNETi		4857

Open Targets

More...OpenTargetsi		ENSG00000139910

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA31688

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		NOVA1

Domain mapping of disease mutations (DMDM)

More...DMDMi		1709303

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000501161 – 507RNA-binding protein Nova-1Add BLAST507

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei154PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		P51513

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		P51513

MaxQB - The MaxQuant DataBase

More...MaxQBi		P51513

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P51513

PeptideAtlas

More...PeptideAtlasi		P51513

PRoteomics IDEntifications database

More...PRIDEi		P51513

ProteomicsDB human proteome resource

More...ProteomicsDBi		56315
56316 [P51513-2]
56317
56318 [P51513-4]

Consortium for Top Down Proteomics

More...TopDownProteomicsi		P51513-2 [P51513-2]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P51513

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		P51513

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Brain.

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000139910 Expressed in 194 organ(s), highest expression level in cerebellum

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		P51513 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		P51513 HS

Organism-specific databases

Human Protein Atlas

More...HPAi		HPA004155

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with PTBP2; the interaction is direct.By similarity

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
GABRG2P185072EBI-726123,EBI-9008430

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		110919, 11 interactors

Protein interaction database and analysis system

More...IntActi		P51513, 10 interactors

Molecular INTeraction database

More...MINTi		P51513

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000438875

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1507
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1DT4X-ray2.60A421-492[»]
2ANNX-ray2.30A49-246[»]
2ANRX-ray1.94A49-246[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		P51513

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P51513

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		P51513

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini49 – 116KH 1PROSITE-ProRule annotationAdd BLAST68
Domaini171 – 237KH 2PROSITE-ProRule annotationAdd BLAST67
Domaini421 – 488KH 3PROSITE-ProRule annotationAdd BLAST68

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi27 – 43Bipartite nuclear localization signalSequence analysisAdd BLAST17

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi273 – 409Ala-richAdd BLAST137

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2191 Eukaryota
ENOG410XRZD LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00940000155573

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000007833

The HOVERGEN Database of Homologous Vertebrate Genes

More...HOVERGENi		HBG082048

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P51513

KEGG Orthology (KO)

More...KOi		K14944

Identification of Orthologs from Complete Genome Data

More...OMAi		VVDFIMD

Database of Orthologous Groups

More...OrthoDBi		1167935at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		P51513

TreeFam database of animal gene trees

More...TreeFami		TF316981

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.1370.10, 3 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
IPR033086 NOVA1

The PANTHER Classification System

More...PANTHERi		PTHR10288:SF223 PTHR10288:SF223, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00013 KH_1, 3 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00322 KH, 3 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF54791 SSF54791, 3 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50084 KH_TYPE_1, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 8 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: P51513-4) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MMAAAPIQQN GTHTGVPIDL DPPDSRKRPL EAPPEAGSTK RTNTGEDGQY 
        60         70         80         90        100
FLKVLIPSYA AGSIIGKGGQ TIVQLQKETG ATIKLSKSKD FYPGTTERVC 
       110        120        130        140        150
LIQGTVEALN AVHGFIAEKI REMPQNVAKT EPVSILQPQT TVNPDRIKQT 
       160        170        180        190        200
LPSSPTTTKS SPSDPMTTSR ANQVKIIVPN STAGLIIGKG GATVKAVMEQ 
       210        220        230        240        250
SGAWVQLSQK PDGINLQERV VTVSGEPEQN RKAVELIIQK IQEDPQSGSC 
       260        270        280        290        300
LNISYANVTG PVANSNPTGS PYANTAEVLP TAAAAAGLLG HANLAGVAAF 
       310        320        330        340        350
PAVLSGFTGN DLVAITSALN TLASYGYNLN TLGLGLSQAA ATGALAAAAA 
       360        370        380        390        400
SANPAAAAAN LLATYASEAS ASGSTAGGTA GTFALGSLAA ATAATNGYFG 
       410        420        430        440        450
AASPLAASAI LGTEKSTDGS KDVVEIAVPE NLVGAILGKG GKTLVEYQEL 
       460        470        480        490        500
TGARIQISKK GEFVPGTRNR KVTITGTPAA TQAAQYLITQ RITYEQGVRA 

ANPQKVG
Length:507
Mass (Da):51,727
Last modified:February 13, 2019 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDBF455477988CDCA
GO
Isoform 2 (identifier: P51513-2) [UniParc]FASTAAdd to basket
Also known as: Tumor

The sequence of this isoform differs from the canonical sequence as follows:
     174-181: VKIIVPNS → KHNISWIS
     182-507: Missing.

Show »
Length:181
Mass (Da):19,491
Checksum:i23EF1C6F5541D52D
GO
Isoform 3 (identifier: P51513-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     150-173: Missing.

Note: Gene prediction based on EST data.
Show »
Length:483
Mass (Da):49,253
Checksum:iBE44FBED4E9664E2
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 8 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F8VWX1F8VWX1_HUMAN
RNA-binding protein Nova-1
NOVA1
173Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F8W659F8W659_HUMAN
RNA-binding protein Nova-1
NOVA1
211Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
G8JLA5G8JLA5_HUMAN
RNA-binding protein Nova-1
NOVA1
109Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F8VW64F8VW64_HUMAN
RNA-binding protein Nova-1
NOVA1
96Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
I3L2B5I3L2B5_HUMAN
RNA-binding protein Nova-1
NOVA1
152Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
J3KQU3J3KQU3_HUMAN
RNA-binding protein Nova-1
NOVA1
277Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F8VYI3F8VYI3_HUMAN
RNA-binding protein Nova-1
NOVA1
121Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0YHZ1H0YHZ1_HUMAN
RNA-binding protein Nova-1
NOVA1
49Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAA16022 differs from that shown. Probable cloning artifact leading to an insertion into the sequence.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_060046150 – 173Missing in isoform 3. Add BLAST24
Alternative sequenceiVSP_060047174 – 181VKIIVPNS → KHNISWIS in isoform 2. 8
Alternative sequenceiVSP_060048182 – 507Missing in isoform 2. Add BLAST326

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
U04840 mRNA Translation: AAA16022.1 Sequence problems.
AK289639 mRNA Translation: BAF82328.1
AK291022 mRNA Translation: BAF83711.1
AL079343 Genomic DNA No translation available.
AL132716 Genomic DNA No translation available.
CH471078 Genomic DNA Translation: EAW65990.1
CH471078 Genomic DNA Translation: EAW65991.1
CH471078 Genomic DNA Translation: EAW65992.1
CH471078 Genomic DNA Translation: EAW65993.1
CH471078 Genomic DNA Translation: EAW65995.1
BC075038 mRNA Translation: AAH75038.1
BC075039 mRNA Translation: AAH75039.1
Z70771 mRNA Translation: CAA94810.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS32060.1 [P51513-5]
CCDS32061.1 [P51513-4]
CCDS9635.1 [P51513-2]

Protein sequence database of the Protein Information Resource

More...PIRi		I38489

NCBI Reference Sequences

More...RefSeqi		NP_002506.2, NM_002515.2 [P51513-4]
NP_006480.2, NM_006489.2 [P51513-5]
NP_006482.1, NM_006491.2 [P51513-2]

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		Hs.31588

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000344429; ENSP00000342387; ENSG00000139910 [P51513-2]
ENST00000465357; ENSP00000447391; ENSG00000139910 [P51513-5]
ENST00000539517; ENSP00000438875; ENSG00000139910 [P51513-4]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		4857

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:4857

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U04840 mRNA Translation: AAA16022.1 Sequence problems.
AK289639 mRNA Translation: BAF82328.1
AK291022 mRNA Translation: BAF83711.1
AL079343 Genomic DNA No translation available.
AL132716 Genomic DNA No translation available.
CH471078 Genomic DNA Translation: EAW65990.1
CH471078 Genomic DNA Translation: EAW65991.1
CH471078 Genomic DNA Translation: EAW65992.1
CH471078 Genomic DNA Translation: EAW65993.1
CH471078 Genomic DNA Translation: EAW65995.1
BC075038 mRNA Translation: AAH75038.1
BC075039 mRNA Translation: AAH75039.1
Z70771 mRNA Translation: CAA94810.1
CCDSiCCDS32060.1 [P51513-5]
CCDS32061.1 [P51513-4]
CCDS9635.1 [P51513-2]
PIRiI38489
RefSeqiNP_002506.2, NM_002515.2 [P51513-4]
NP_006480.2, NM_006489.2 [P51513-5]
NP_006482.1, NM_006491.2 [P51513-2]
UniGeneiHs.31588

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1DT4X-ray2.60A421-492[»]
2ANNX-ray2.30A49-246[»]
2ANRX-ray1.94A49-246[»]
ProteinModelPortaliP51513
SMRiP51513
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi110919, 11 interactors
IntActiP51513, 10 interactors
MINTiP51513
STRINGi9606.ENSP00000438875

PTM databases

iPTMnetiP51513
PhosphoSitePlusiP51513

Polymorphism and mutation databases

BioMutaiNOVA1
DMDMi1709303

Proteomic databases

EPDiP51513
jPOSTiP51513
MaxQBiP51513
PaxDbiP51513
PeptideAtlasiP51513
PRIDEiP51513
ProteomicsDBi56315
56316 [P51513-2]
56317
56318 [P51513-4]
TopDownProteomicsiP51513-2 [P51513-2]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000344429; ENSP00000342387; ENSG00000139910 [P51513-2]
ENST00000465357; ENSP00000447391; ENSG00000139910 [P51513-5]
ENST00000539517; ENSP00000438875; ENSG00000139910 [P51513-4]
GeneIDi4857
KEGGihsa:4857

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		4857
DisGeNETi4857
EuPathDBiHostDB:ENSG00000139910.19

GeneCards: human genes, protein and diseases

More...GeneCardsi		NOVA1

H-Invitational Database, human transcriptome db

More...H-InvDBi		HIX0037755
HGNCiHGNC:7886 NOVA1
HPAiHPA004155
MIMi602157 gene
neXtProtiNX_P51513
OpenTargetsiENSG00000139910
PharmGKBiPA31688

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiKOG2191 Eukaryota
ENOG410XRZD LUCA
GeneTreeiENSGT00940000155573
HOGENOMiHOG000007833
HOVERGENiHBG082048
InParanoidiP51513
KOiK14944
OMAiVVDFIMD
OrthoDBi1167935at2759
PhylomeDBiP51513
TreeFamiTF316981

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		NOVA1 human
EvolutionaryTraceiP51513

The Gene Wiki collection of pages on human genes and proteins

More...GeneWikii		NOVA1

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		4857

Protein Ontology

More...PROi		PR:P51513

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000139910 Expressed in 194 organ(s), highest expression level in cerebellum
ExpressionAtlasiP51513 baseline and differential
GenevisibleiP51513 HS

Family and domain databases

Gene3Di3.30.1370.10, 3 hits
InterProiView protein in InterPro
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
IPR033086 NOVA1
PANTHERiPTHR10288:SF223 PTHR10288:SF223, 1 hit
PfamiView protein in Pfam
PF00013 KH_1, 3 hits
SMARTiView protein in SMART
SM00322 KH, 3 hits
SUPFAMiSSF54791 SSF54791, 3 hits
PROSITEiView protein in PROSITE
PS50084 KH_TYPE_1, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNOVA1_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P51513
Secondary accession number(s): A8K0S4
, A8K4Q7, D3DS81, D3DS82, Q6B004
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: February 13, 2019
Last modified: February 13, 2019
This is version 160 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 14
    Human chromosome 14: entries, gene names and cross-references to MIM
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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