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Protein

40S ribosomal protein S5-2

Gene

RPS5B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • rRNA binding Source: GO_Central
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S5-2
Alternative name(s):
AtRPS5A1 Publication
Protein ARABIDOPSIS MINUTE-LIKE 11 Publication
Gene namesi
Name:RPS5B1 Publication
Synonyms:AML11 Publication
Ordered Locus Names:At3g11940
ORF Names:F26K24.23, MEC18.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G11940
TAIRilocus:2081546 AT3G11940

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Disruption phenotypei

Embryonic lethality when homozygous, due to cell division arrest at early embryonic development stage.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00001245352 – 20740S ribosomal protein S5-2Add BLAST206

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP51427
PRIDEiP51427

PTM databases

iPTMnetiP51427

Expressioni

Tissue specificityi

Expressed in root tips, lateral root primordia, leaf primordia, shoot apical meristem and vasculature of cotyledons.1 Publication

Gene expression databases

ExpressionAtlasiP51427 baseline and differential
GenevisibleiP51427 AT

Interactioni

Protein-protein interaction databases

BioGridi5701, 2 interactors
STRINGi3702.AT3G11940.1

Structurei

3D structure databases

ProteinModelPortaliP51427
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3291 Eukaryota
COG0049 LUCA
HOGENOMiHOG000039066
InParanoidiP51427
KOiK02989
OMAiDSLMMKG
OrthoDBiEOG09360OEB
PhylomeDBiP51427

Family and domain databases

CDDicd14867 uS7_Eukaryote, 1 hit
Gene3Di1.10.455.10, 1 hit
InterProiView protein in InterPro
IPR000235 Ribosomal_S5/S7
IPR005716 Ribosomal_S5/S7_euk/arc
IPR020606 Ribosomal_S7_CS
IPR023798 Ribosomal_S7_dom
IPR036823 Ribosomal_S7_dom_sf
PANTHERiPTHR11205 PTHR11205, 1 hit
PfamiView protein in Pfam
PF00177 Ribosomal_S7, 1 hit
PIRSFiPIRSF002122 RPS7p_RPS7a_RPS5e_RPS7o, 1 hit
SUPFAMiSSF47973 SSF47973, 1 hit
TIGRFAMsiTIGR01028 uS7_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00052 RIBOSOMAL_S7, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P51427-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATAADVDAE IQQALTNEVK LFNRWTYDDV TVTDISLVDY IGVQAAKHAT
60 70 80 90 100
FVPHTAGRYS VKRFRKAQCP IVERLTNSLM MHGRNNGKKL MAVRIVKHAM
110 120 130 140 150
EIIHLLSDLN PIQVIIDAIV NSGPREDATR IGSAGVVRRQ AVDISPLRRV
160 170 180 190 200
NQAIFLITTG AREAAFRNIK TIAECLADEL INAAKGSSNS YAIKKKDEIE

RVAKANR
Length:207
Mass (Da):22,921
Last modified:January 10, 2003 - v2
Checksum:i444B40E93E997326
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002040 Genomic DNA Translation: BAB03103.1
AC016795 Genomic DNA Translation: AAF23210.1
CP002686 Genomic DNA Translation: AEE75123.1
CP002686 Genomic DNA Translation: AEE75124.1
AY045846 mRNA Translation: AAK76520.1
AY091376 mRNA Translation: AAM14315.1
AY086938 mRNA Translation: AAM64502.1
Z18496 mRNA Translation: CAA79205.1
RefSeqiNP_187800.1, NM_112027.2
NP_850564.1, NM_180233.3
UniGeneiAt.24761

Genome annotation databases

EnsemblPlantsiAT3G11940.1; AT3G11940.1; AT3G11940
AT3G11940.2; AT3G11940.2; AT3G11940
GeneIDi820367
GrameneiAT3G11940.1; AT3G11940.1; AT3G11940
AT3G11940.2; AT3G11940.2; AT3G11940
KEGGiath:AT3G11940

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002040 Genomic DNA Translation: BAB03103.1
AC016795 Genomic DNA Translation: AAF23210.1
CP002686 Genomic DNA Translation: AEE75123.1
CP002686 Genomic DNA Translation: AEE75124.1
AY045846 mRNA Translation: AAK76520.1
AY091376 mRNA Translation: AAM14315.1
AY086938 mRNA Translation: AAM64502.1
Z18496 mRNA Translation: CAA79205.1
RefSeqiNP_187800.1, NM_112027.2
NP_850564.1, NM_180233.3
UniGeneiAt.24761

3D structure databases

ProteinModelPortaliP51427
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5701, 2 interactors
STRINGi3702.AT3G11940.1

PTM databases

iPTMnetiP51427

Proteomic databases

PaxDbiP51427
PRIDEiP51427

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G11940.1; AT3G11940.1; AT3G11940
AT3G11940.2; AT3G11940.2; AT3G11940
GeneIDi820367
GrameneiAT3G11940.1; AT3G11940.1; AT3G11940
AT3G11940.2; AT3G11940.2; AT3G11940
KEGGiath:AT3G11940

Organism-specific databases

AraportiAT3G11940
TAIRilocus:2081546 AT3G11940

Phylogenomic databases

eggNOGiKOG3291 Eukaryota
COG0049 LUCA
HOGENOMiHOG000039066
InParanoidiP51427
KOiK02989
OMAiDSLMMKG
OrthoDBiEOG09360OEB
PhylomeDBiP51427

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

PROiPR:P51427

Gene expression databases

ExpressionAtlasiP51427 baseline and differential
GenevisibleiP51427 AT

Family and domain databases

CDDicd14867 uS7_Eukaryote, 1 hit
Gene3Di1.10.455.10, 1 hit
InterProiView protein in InterPro
IPR000235 Ribosomal_S5/S7
IPR005716 Ribosomal_S5/S7_euk/arc
IPR020606 Ribosomal_S7_CS
IPR023798 Ribosomal_S7_dom
IPR036823 Ribosomal_S7_dom_sf
PANTHERiPTHR11205 PTHR11205, 1 hit
PfamiView protein in Pfam
PF00177 Ribosomal_S7, 1 hit
PIRSFiPIRSF002122 RPS7p_RPS7a_RPS5e_RPS7o, 1 hit
SUPFAMiSSF47973 SSF47973, 1 hit
TIGRFAMsiTIGR01028 uS7_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00052 RIBOSOMAL_S7, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRS52_ARATH
AccessioniPrimary (citable) accession number: P51427
Secondary accession number(s): Q9SF05
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: January 10, 2003
Last modified: November 7, 2018
This is version 130 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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