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Protein

40S ribosomal protein S13

Gene

rps-13

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:rps-13
ORF Names:C16A3.9
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC16A3.9 ; CE04009 ; WBGene00004482 ; rps-13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001156722 – 15140S ribosomal protein S13Add BLAST150

Proteomic databases

EPDiP51404
PaxDbiP51404
PeptideAtlasiP51404
PRIDEiP51404

Expressioni

Gene expression databases

BgeeiWBGene00004482

Interactioni

Protein-protein interaction databases

BioGridi41119, 2 interactors
DIPiDIP-25602N
IntActiP51404, 3 interactors
STRINGi6239.C16A3.9.1

Structurei

3D structure databases

ProteinModelPortaliP51404
SMRiP51404
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400 Eukaryota
COG0184 LUCA
GeneTreeiENSGT00390000017491
HOGENOMiHOG000180723
InParanoidiP51404
KOiK02953
OMAiWHLVKKA
OrthoDBiEOG091G0X8F
PhylomeDBiP51404

Family and domain databases

CDDicd00353 Ribosomal_S15p_S13e, 1 hit
HAMAPiMF_01343_A Ribosomal_S15_A, 1 hit
InterProiView protein in InterPro
IPR012606 Ribosomal_S13/S15_N
IPR000589 Ribosomal_S15
IPR023029 Ribosomal_S15P
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR11885 PTHR11885, 1 hit
PfamiView protein in Pfam
PF08069 Ribosomal_S13_N, 1 hit
PF00312 Ribosomal_S15, 1 hit
SMARTiView protein in SMART
SM01386 Ribosomal_S13_N, 1 hit
SM01387 Ribosomal_S15, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit
PROSITEiView protein in PROSITE
PS00362 RIBOSOMAL_S15, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P51404-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRMHNPGKG MAKSAIPYRR SVPSWQKMTA EEVQDQIVKM AKKGLRPSQI
60 70 80 90 100
GVILRDSHGV GQVRRLAGNK IFRILKSKGM APELPEDLYH LVKKAVAIRK
110 120 130 140 150
HLERSRKDID SKYRLILVES RIHRLARYYK TKRQLPPTWK YESGTAASLV

S
Length:151
Mass (Da):17,316
Last modified:January 23, 2007 - v2
Checksum:i22859158F5F91D07
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080367 Genomic DNA Translation: CCD63229.1
PIRiH88480
RefSeqiNP_498393.1, NM_065992.5
UniGeneiCel.7376

Genome annotation databases

EnsemblMetazoaiC16A3.9; C16A3.9; WBGene00004482
GeneIDi175901
KEGGicel:CELE_C16A3.9
UCSCiC16A3.9.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS13_CAEEL
AccessioniPrimary (citable) accession number: P51404
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: January 23, 2007
Last modified: July 18, 2018
This is version 122 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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