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Protein

40S ribosomal protein S2

Gene

rps-2

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S2
Gene namesi
Name:rps-2
ORF Names:C49H3.11
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC49H3.11 ; CE04237 ; WBGene00004471 ; rps-2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001316771 – 27240S ribosomal protein S2Add BLAST272

Proteomic databases

EPDiP51403
PaxDbiP51403
PeptideAtlasiP51403
PRIDEiP51403

PTM databases

iPTMnetiP51403

Expressioni

Gene expression databases

BgeeiWBGene00004471

Interactioni

Protein-protein interaction databases

BioGridi42699, 3 interactors
DIPiDIP-25206N
IntActiP51403, 3 interactors
MINTiP51403
STRINGi6239.C49H3.11.3

Structurei

3D structure databases

ProteinModelPortaliP51403
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 161S5 DRBMPROSITE-ProRule annotationAdd BLAST64

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0877 Eukaryota
COG0098 LUCA
GeneTreeiENSGT00390000001433
HOGENOMiHOG000072596
InParanoidiP51403
KOiK02981
OMAiEDCYTQS
OrthoDBiEOG091G0LPC
PhylomeDBiP51403

Family and domain databases

Gene3Di3.30.230.10, 1 hit
InterProiView protein in InterPro
IPR000851 Ribosomal_S5
IPR005324 Ribosomal_S5_C
IPR020568 Ribosomal_S5_D2-typ_fold
IPR014721 Ribosomal_S5_D2-typ_fold_subgr
IPR005711 Ribosomal_S5_euk/arc
IPR013810 Ribosomal_S5_N
IPR018192 Ribosomal_S5_N_CS
PANTHERiPTHR13718 PTHR13718, 1 hit
PfamiView protein in Pfam
PF00333 Ribosomal_S5, 1 hit
PF03719 Ribosomal_S5_C, 1 hit
SUPFAMiSSF54211 SSF54211, 1 hit
TIGRFAMsiTIGR01020 uS5_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00585 RIBOSOMAL_S5, 1 hit
PS50881 S5_DSRBD, 1 hit

Sequencei

Sequence statusi: Complete.

P51403-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADRGGFQSG FGGRGGGRGG ARPAGDRPAG RGGRGGRGGR GGRGGRAGRG
60 70 80 90 100
GEKETEWTPV TKLGRLVKEK KITTLEEIYL NSLPIKEFEI IDALCSNLKD
110 120 130 140 150
EVLKISPVQK QTTAGQRTRF KAFVAIGDHA GHVGLGVKCS KEVATAIRGA
160 170 180 190 200
IVAAKLAVVP VRRGYWGNKI GLPHTVPCKV TGKCASVMVR LIPAPRGTGI
210 220 230 240 250
VSAPVPKKLL HMAGIEDCYT AAKGSTATLG NFAKATYAAL QRTYSYLTPD
260 270
LWKEEALEKS PYQRHHEYLA RN
Length:272
Mass (Da):28,960
Last modified:October 1, 1996 - v1
Checksum:i60049F6B7DB8CB34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080908 Genomic DNA Translation: CCD67711.1
PIRiT34184
RefSeqiNP_501322.1, NM_068921.5
UniGeneiCel.23413

Genome annotation databases

EnsemblMetazoaiC49H3.11.1; C49H3.11.1; WBGene00004471
C49H3.11.2; C49H3.11.2; WBGene00004471
GeneIDi177583
KEGGicel:CELE_C49H3.11
UCSCiC49H3.11.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS2_CAEEL
AccessioniPrimary (citable) accession number: P51403
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: July 18, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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