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Protein

Ras-related protein Rab-7a

Gene

Rab7a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Key regulator in endo-lysosomal trafficking. Governs early-to-late endosomal maturation, microtubule minus-end as well as plus-end directed endosomal migration and positioning, and endosome-lysosome transport through different protein-protein interaction cascades. Plays a central role, not only in endosomal traffic, but also in many other cellular and physiological events, such as growth-factor-mediated cell signaling, nutrient-transportor mediated nutrient uptake, neurotrophin transport in the axons of neurons and lipid metabolism. Also involved in regulation of some specialized endosomal membrane trafficking, such as maturation of melanosomes, pathogen-induced phagosomes (or vacuoles) and autophagosomes. Plays a role in the maturation and acidification of phagosomes that engulf pathogens, such as S.aureus and Mycobacteria. Plays a role in the fusion of phagosomes with lysosomes. Plays important roles in microbial pathogen infection and survival, as well as in participating in the life cycle of viruses. Microbial pathogens possess survival strategies governed by RAB7A, sometimes by employing RAB7A function (e.g. Salmonella) and sometimes by excluding RAB7A function (e.g. Mycobacterium). In concert with RAC1, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Controls the endosomal trafficking and neurite outgrowth signaling of NTRK1/TRKA. Regulates the endocytic trafficking of the EGF-EGFR complex by regulating its lysosomal degradation (By similarity). Involved in the ADRB2-stimulated lipolysis through lipophagy, a cytosolic lipase-independent autophagic pathway (PubMed:23708524). Required for the exosomal release of SDCBP, CD63 and syndecan (By similarity).By similarity1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi15 – 22GTPBy similarity8
Nucleotide bindingi34 – 40GTPBy similarity7
Nucleotide bindingi63 – 67GTPBy similarity5
Nucleotide bindingi125 – 128GTPBy similarity4
Nucleotide bindingi156 – 157GTPBy similarity2

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processAutophagy, Lipid degradation, Lipid metabolism, Protein transport, Transport
LigandGTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-MMU-2132295 MHC class II antigen presentation
R-MMU-6798695 Neutrophil degranulation
R-MMU-8854214 TBC/RABGAPs
R-MMU-8873719 RAB geranylgeranylation
R-MMU-8876198 RAB GEFs exchange GTP for GDP on RABs

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein Rab-7a
Gene namesi
Name:Rab7a
Synonyms:Rab7
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:105068 Rab7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasmic vesicle, Endosome, Lipid droplet, Lysosome, Membrane

Pathology & Biotechi

Disruption phenotypei

Reduces both the basal and, to a greater degree, agonist-stimulated glycerol releases. the ADRB2-stimulated liposlysis.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001211222 – 207Ras-related protein Rab-7aAdd BLAST206

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylthreonineBy similarity1
Modified residuei72PhosphoserineCombined sources1
Lipidationi205S-geranylgeranyl cysteineBy similarity1
Modified residuei207Cysteine methyl esterBy similarity1
Lipidationi207S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Acetylation, Lipoprotein, Methylation, Phosphoprotein, Prenylation

Proteomic databases

EPDiP51150
PaxDbiP51150
PeptideAtlasiP51150
PRIDEiP51150

PTM databases

iPTMnetiP51150
PhosphoSitePlusiP51150
SwissPalmiP51150

Expressioni

Tissue specificityi

Widely expressed. High expression in liver, heart and kidney. Found in sensory and motor neurons.1 Publication

Gene expression databases

BgeeiENSMUSG00000079477 Expressed in 300 organ(s), highest expression level in primary oocyte
CleanExiMM_RAB7
ExpressionAtlasiP51150 baseline and differential
GenevisibleiP51150 MM

Interactioni

Subunit structurei

Interacts with NTRK1/TRKA (By similarity), RILP (By similarity), PSMA7 (By similarity), RNF115 (PubMed:12972561) and FYCO1 (By similarity). Interacts with the PIK3C3/VPS34-PIK3R4 complex (By similarity). The GTP-bound form interacts with OSBPL1A and RAC1 (By similarity). Interacts with CLN3 (By similarity). Interacts with CHM, the substrate-binding subunit of the Rab geranylgeranyltransferase complex (By similarity). Interacts with C9orf72 (PubMed:24549040). Does not interact with HPS4 and the BLOC-3 complex (heterodimer of HPS1 and HPS4) (PubMed:20048159). Interacts with CLN5 (By similarity). Interacts with PLEKHM1 (via N- and C-terminus) (PubMed:27777970). Interacts with RUFY4 (By similarity).By similarity4 Publications

GO - Molecular functioni

Protein-protein interaction databases

BioGridi202553, 13 interactors
DIPiDIP-60513N
IntActiP51150, 15 interactors
MINTiP51150
STRINGi10090.ENSMUSP00000092658

Structurei

Secondary structure

1207
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliP51150
SMRiP51150
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi37 – 45Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0394 Eukaryota
ENOG410XNZV LUCA
GeneTreeiENSGT00760000119125
HOGENOMiHOG000233968
HOVERGENiHBG009351
InParanoidiP51150
KOiK07897
OMAiDVTMPNT
OrthoDBiEOG091G0JIV
PhylomeDBiP51150
TreeFamiTF105605

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

P51150-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSRKKVLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV
60 70 80 90 100
MVDDRLVTMQ IWDTAGQERF QSLGVAFYRG ADCCVLVFDV TAPNTFKTLD
110 120 130 140 150
SWRDEFLIQA SPRDPENFPF VVLGNKIDLE NRQVATKRAQ AWCYSKNNIP
160 170 180 190 200
YFETSAKEAI NVEQAFQTIA RNALKQETEV ELYNEFPEPI KLDKNDRAKA

SAESCSC
Length:207
Mass (Da):23,490
Last modified:April 13, 2004 - v2
Checksum:iA2AF33B16A672971
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0N4SVG9A0A0N4SVG9_MOUSE
RAB7, member RAS oncogene family
Rab7
98Annotation score:
A0A0N4SVR6A0A0N4SVR6_MOUSE
RAB7, member RAS oncogene family
Rab7
88Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti145S → R in CAA61797 (PubMed:8547311).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89650 mRNA Translation: CAA61797.1
AK005004 mRNA Translation: BAB23738.1
BC004597 mRNA Translation: AAH04597.1
BC086793 mRNA Translation: AAH86793.1
CCDSiCCDS39552.1
PIRiS62733
RefSeqiNP_001280581.1, NM_001293652.1
NP_001280582.1, NM_001293653.1
NP_001280583.1, NM_001293654.1
NP_001280584.1, NM_001293655.1
NP_033031.2, NM_009005.3
UniGeneiMm.333233
Mm.471618
Mm.486309

Genome annotation databases

EnsembliENSMUST00000095048; ENSMUSP00000092658; ENSMUSG00000079477
ENSMUST00000113596; ENSMUSP00000109226; ENSMUSG00000079477
ENSMUST00000113597; ENSMUSP00000109227; ENSMUSG00000079477
ENSMUST00000113598; ENSMUSP00000109228; ENSMUSG00000079477
ENSMUST00000113600; ENSMUSP00000109230; ENSMUSG00000079477
GeneIDi19349
KEGGimmu:19349
UCSCiuc009cuv.2 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89650 mRNA Translation: CAA61797.1
AK005004 mRNA Translation: BAB23738.1
BC004597 mRNA Translation: AAH04597.1
BC086793 mRNA Translation: AAH86793.1
CCDSiCCDS39552.1
PIRiS62733
RefSeqiNP_001280581.1, NM_001293652.1
NP_001280582.1, NM_001293653.1
NP_001280583.1, NM_001293654.1
NP_001280584.1, NM_001293655.1
NP_033031.2, NM_009005.3
UniGeneiMm.333233
Mm.471618
Mm.486309

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5Z2MX-ray2.14A/C1-176[»]
ProteinModelPortaliP51150
SMRiP51150
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi202553, 13 interactors
DIPiDIP-60513N
IntActiP51150, 15 interactors
MINTiP51150
STRINGi10090.ENSMUSP00000092658

PTM databases

iPTMnetiP51150
PhosphoSitePlusiP51150
SwissPalmiP51150

Proteomic databases

EPDiP51150
PaxDbiP51150
PeptideAtlasiP51150
PRIDEiP51150

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000095048; ENSMUSP00000092658; ENSMUSG00000079477
ENSMUST00000113596; ENSMUSP00000109226; ENSMUSG00000079477
ENSMUST00000113597; ENSMUSP00000109227; ENSMUSG00000079477
ENSMUST00000113598; ENSMUSP00000109228; ENSMUSG00000079477
ENSMUST00000113600; ENSMUSP00000109230; ENSMUSG00000079477
GeneIDi19349
KEGGimmu:19349
UCSCiuc009cuv.2 mouse

Organism-specific databases

CTDi19349
MGIiMGI:105068 Rab7

Phylogenomic databases

eggNOGiKOG0394 Eukaryota
ENOG410XNZV LUCA
GeneTreeiENSGT00760000119125
HOGENOMiHOG000233968
HOVERGENiHBG009351
InParanoidiP51150
KOiK07897
OMAiDVTMPNT
OrthoDBiEOG091G0JIV
PhylomeDBiP51150
TreeFamiTF105605

Enzyme and pathway databases

ReactomeiR-MMU-2132295 MHC class II antigen presentation
R-MMU-6798695 Neutrophil degranulation
R-MMU-8854214 TBC/RABGAPs
R-MMU-8873719 RAB geranylgeranylation
R-MMU-8876198 RAB GEFs exchange GTP for GDP on RABs

Miscellaneous databases

ChiTaRSiRab7 mouse
PROiPR:P51150
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000079477 Expressed in 300 organ(s), highest expression level in primary oocyte
CleanExiMM_RAB7
ExpressionAtlasiP51150 baseline and differential
GenevisibleiP51150 MM

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRAB7A_MOUSE
AccessioniPrimary (citable) accession number: P51150
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: April 13, 2004
Last modified: November 7, 2018
This is version 171 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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