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Entry version 147 (02 Dec 2020)
Sequence version 3 (02 Aug 2002)
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Protein

40S ribosomal protein S30

Gene

RPS30A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
40S ribosomal protein S30
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPS30A
Ordered Locus Names:At2g19750
ORF Names:F6F22.22
AND
Name:RPS30B
Ordered Locus Names:At4g29390
ORF Names:F17A13.210
AND
Name:RPS30C
Ordered Locus Names:At5g56670
ORF Names:MIK19.12
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 2, Chromosome 4, Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT2G19750
AT4G29390
AT5G56670

The Arabidopsis Information Resource

More...
TAIRi
locus:2051985, AT2G19750
locus:2118244, AT4G29390
locus:2164986, AT5G56670

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001740061 – 6240S ribosomal protein S30Add BLAST62

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P49689

PRoteomics IDEntifications database

More...
PRIDEi
P49689

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
226882

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P49689

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
P49689, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
P49689, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
1849, 3 interactors

Protein interaction database and analysis system

More...
IntActi
P49689, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT5G56670.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P49689

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0009, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_010412_5_1_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P49689

Identification of Orthologs from Complete Genome Data

More...
OMAi
KKGYNTQ

Database of Orthologous Groups

More...
OrthoDBi
1642945at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
P49689

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006846, Ribosomal_S30

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04758, Ribosomal_S30, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P49689-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG
60
FGKKRGPNSS EK
Length:62
Mass (Da):6,887
Last modified:August 2, 2002 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i95D8F3EB72F53F33
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti17 – 19QTP → RHQ in CAA81482 (PubMed:8580968).Curated3

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC005169 Genomic DNA Translation: AAC62141.2
AL161574 Genomic DNA Translation: CAB79697.1
AL096692 Genomic DNA No translation available.
AB013392 Genomic DNA Translation: BAB09885.1
CP002685 Genomic DNA Translation: AEC06922.1
CP002687 Genomic DNA Translation: AEE85625.1
CP002688 Genomic DNA Translation: AED96794.1
AY052341 mRNA Translation: AAK96533.1
AY061910 mRNA Translation: AAL31237.1
AY128361 mRNA Translation: AAM91564.1
BT006503 mRNA Translation: AAP21311.1
AY088766 mRNA Translation: AAM67081.1
Z26869 mRNA Translation: CAA81482.1

Protein sequence database of the Protein Information Resource

More...
PIRi
F84580
H85342

NCBI Reference Sequences

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RefSeqi
NP_194668.1, NM_119084.3
NP_200478.1, NM_125050.3
NP_565458.1, NM_127533.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G19750.1; AT2G19750.1; AT2G19750
AT4G29390.1; AT4G29390.1; AT4G29390
AT5G56670.1; AT5G56670.1; AT5G56670

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
816494
829060
835768

Gramene; a comparative resource for plants

More...
Gramenei
AT2G19750.1; AT2G19750.1; AT2G19750
AT4G29390.1; AT4G29390.1; AT4G29390
AT5G56670.1; AT5G56670.1; AT5G56670

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G19750
ath:AT4G29390
ath:AT5G56670

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005169 Genomic DNA Translation: AAC62141.2
AL161574 Genomic DNA Translation: CAB79697.1
AL096692 Genomic DNA No translation available.
AB013392 Genomic DNA Translation: BAB09885.1
CP002685 Genomic DNA Translation: AEC06922.1
CP002687 Genomic DNA Translation: AEE85625.1
CP002688 Genomic DNA Translation: AED96794.1
AY052341 mRNA Translation: AAK96533.1
AY061910 mRNA Translation: AAL31237.1
AY128361 mRNA Translation: AAM91564.1
BT006503 mRNA Translation: AAP21311.1
AY088766 mRNA Translation: AAM67081.1
Z26869 mRNA Translation: CAA81482.1
PIRiF84580
H85342
RefSeqiNP_194668.1, NM_119084.3
NP_200478.1, NM_125050.3
NP_565458.1, NM_127533.3

3D structure databases

SMRiP49689
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi1849, 3 interactors
IntActiP49689, 2 interactors
STRINGi3702.AT5G56670.1

PTM databases

iPTMnetiP49689

Proteomic databases

PaxDbiP49689
PRIDEiP49689
ProteomicsDBi226882

Genome annotation databases

EnsemblPlantsiAT2G19750.1; AT2G19750.1; AT2G19750
AT4G29390.1; AT4G29390.1; AT4G29390
AT5G56670.1; AT5G56670.1; AT5G56670
GeneIDi816494
829060
835768
GrameneiAT2G19750.1; AT2G19750.1; AT2G19750
AT4G29390.1; AT4G29390.1; AT4G29390
AT5G56670.1; AT5G56670.1; AT5G56670
KEGGiath:AT2G19750
ath:AT4G29390
ath:AT5G56670

Organism-specific databases

AraportiAT2G19750
AT4G29390
AT5G56670
TAIRilocus:2051985, AT2G19750
locus:2118244, AT4G29390
locus:2164986, AT5G56670

Phylogenomic databases

eggNOGiKOG0009, Eukaryota
HOGENOMiCLU_010412_5_1_1
InParanoidiP49689
OMAiKKGYNTQ
OrthoDBi1642945at2759
PhylomeDBiP49689

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P49689

Gene expression databases

ExpressionAtlasiP49689, baseline and differential
GenevisibleiP49689, AT

Family and domain databases

InterProiView protein in InterPro
IPR006846, Ribosomal_S30
PfamiView protein in Pfam
PF04758, Ribosomal_S30, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRS30_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P49689
Secondary accession number(s): O82203, Q9M0E4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: August 2, 2002
Last modified: December 2, 2020
This is version 147 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
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