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Protein

40S ribosomal protein S3a

Gene

rps-1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S3aUniRule annotation
Gene namesi
Name:rps-1UniRule annotation
ORF Names:F56F3.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF56F3.5 ; CE00664 ; WBGene00004470 ; rps-1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedUniRule annotation
ChainiPRO_00001535302 – 25740S ribosomal protein S3aAdd BLAST256

Proteomic databases

EPDiP48154
PaxDbiP48154
PeptideAtlasiP48154
PRIDEiP48154

PTM databases

iPTMnetiP48154

Expressioni

Gene expression databases

BgeeiWBGene00004470

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S).UniRule annotation

Protein-protein interaction databases

BioGridi40820, 3 interactors
DIPiDIP-25062N
IntActiP48154, 3 interactors
STRINGi6239.F56F3.5.2

Structurei

3D structure databases

ProteinModelPortaliP48154
SMRiP48154
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS1 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1628 Eukaryota
COG1890 LUCA
GeneTreeiENSGT00390000018433
HOGENOMiHOG000105220
InParanoidiP48154
KOiK02984
OMAiMFEIMTR
OrthoDBiEOG091G0HTU
PhylomeDBiP48154

Family and domain databases

HAMAPiMF_03122 Ribosomal_S3Ae_euk, 1 hit
InterProiView protein in InterPro
IPR027500 Ribosomal_S1/3_euk
IPR001593 Ribosomal_S3Ae
IPR018281 Ribosomal_S3Ae_CS
PfamiView protein in Pfam
PF01015 Ribosomal_S3Ae, 1 hit
SMARTiView protein in SMART
SM01397 Ribosomal_S3Ae, 1 hit
PROSITEiView protein in PROSITE
PS01191 RIBOSOMAL_S3AE, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48154-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVGKNNNKM GKKGGKKKAV DPFSRKEWYD IKAPNMFNTR QVGKTLINRT
60 70 80 90 100
QGTKIASEGL KGRVFEVSLG DLNNSEADFR KFKLIAEDVQ GKNVLTNFHA
110 120 130 140 150
MSMTHDKLCS IVKKWHTLIE ANTAVKTTDG YTLRVFVIAF TKKSVNQVKK
160 170 180 190 200
TSYTKTSKIR KIRSEMIGCI EKEVTGCDLK EVVSKLIPDS IGKDIEKTCS
210 220 230 240 250
KLYPLQEVYI RKVKIIKRPK VDLGRLHDLH GDSITVGADG EKVDRPDDYE

PPVQQEV
Length:257
Mass (Da):28,961
Last modified:January 23, 2007 - v2
Checksum:iFF33139D7640DCD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z32681 Genomic DNA Translation: CAA83605.1
PIRiS43584
RefSeqiNP_497910.1, NM_065509.5
UniGeneiCel.10397

Genome annotation databases

EnsemblMetazoaiF56F3.5.1; F56F3.5.1; WBGene00004470
F56F3.5.2; F56F3.5.2; WBGene00004470
GeneIDi175584
KEGGicel:CELE_F56F3.5
UCSCiF56F3.5 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS3A_CAEEL
AccessioniPrimary (citable) accession number: P48154
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: July 18, 2018
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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