XCL1

Functionⁱ

Chemotactic activity for lymphocytes but not for monocytes or neutrophils. In thymus, mediates medullary accumulation of thymic dendritic cells and contributes to regulatoy T cell development, playing a role in self-tolerance establishment.By similarity

GO - Molecular functionⁱ

CCR chemokine receptor binding Source: GO_Central
chemokine activity
Source: BHF-UCL
Inferred from direct assayⁱ
- 7602097
chemokine receptor binding
Source: BHF-UCL
Inferred from direct assayⁱ
- 9632725
protein homodimerization activity
Source: BHF-UCL
Inferred from direct assayⁱ
- 11889129

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

antimicrobial humoral immune response mediated by antimicrobial peptide
Source: UniProtKB
Inferred from direct assayⁱ
- 12949249
cell-cell signaling
Source: BHF-UCL
Inferred from direct assayⁱ
- 7602097
cellular response to interferon-gamma Source: GO_Central
cellular response to interleukin-1 Source: GO_Central
cellular response to interleukin-4 Source: BHF-UCL
cellular response to transforming growth factor beta stimulus Source: BHF-UCL
cellular response to tumor necrosis factor Source: GO_Central
chemokine-mediated signaling pathway Source: GO_Central
G-protein coupled receptor signaling pathway Source: GO_Central
killing of cells of other organism
Source: UniProtKB
Inferred from direct assayⁱ
- 12949249
mature natural killer cell chemotaxis
Source: BHF-UCL
Inferred from direct assayⁱ
- 9029087
monocyte chemotaxis Source: GO_Central
negative regulation of CD4-positive, alpha-beta T cell proliferation
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of DNA-binding transcription factor activity
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of interferon-gamma production
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of interleukin-2 production
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of T cell cytokine production
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of T-helper 1 cell activation
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
negative regulation of T-helper 1 type immune response
Source: BHF-UCL
Inferred by curatorⁱ
- 10887101
negative regulation of transcription, DNA-templated
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
neutrophil chemotaxis
Source: BHF-UCL
Traceable author statementⁱ
- 11889129
positive regulation of B cell chemotaxis Source: BHF-UCL
positive regulation of CD4-positive, alpha-beta T cell proliferation Source: BHF-UCL
positive regulation of CD8-positive, alpha-beta T cell proliferation
Source: BHF-UCL
Inferred from direct assayⁱ
- 10887101
positive regulation of ERK1 and ERK2 cascade Source: GO_Central
positive regulation of granzyme A production
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
positive regulation of granzyme B production
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
positive regulation of GTPase activity Source: GO_Central
positive regulation of immunoglobulin production in mucosal tissue Source: BHF-UCL
positive regulation of interleukin-10 production
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
positive regulation of leukocyte chemotaxis Source: BHF-UCL
positive regulation of natural killer cell chemotaxis
Source: BHF-UCL
Inferred from direct assayⁱ
- 9029087
positive regulation of neutrophil chemotaxis Source: BHF-UCL
positive regulation of release of sequestered calcium ion into cytosol
Source: BHF-UCL
Inferred from direct assayⁱ
- 7602097
positive regulation of T cell chemotaxis
Source: BHF-UCL
Inferred from direct assayⁱ
- 7602097
positive regulation of T cell cytokine production Source: BHF-UCL
positive regulation of T cell mediated cytotoxicity
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
positive regulation of T-helper 1 cell cytokine production Source: BHF-UCL
positive regulation of T-helper 2 cell cytokine production Source: BHF-UCL
positive regulation of thymocyte migration Source: BHF-UCL
positive regulation of transforming growth factor beta production
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
regulation of inflammatory response
Source: BHF-UCL
Inferred from direct assayⁱ
- 18832695
release of sequestered calcium ion into cytosol Source: BHF-UCL
response to virus
Source: BHF-UCL
Inferred from direct assayⁱ
- 14734774
signal transduction
Source: BHF-UCL
Inferred by curatorⁱ
- 9632725

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Cytokine
Biological process	Chemotaxis

Enzyme and pathway databases

Reactomeⁱ	R-HSA-380108 Chemokine receptors bind chemokines R-HSA-416476 G alpha (q) signalling events
SIGNORⁱ	P47992

Protein family/group databases

MoonDBⁱ	P47992 Curated
MoonProtⁱ	P47992

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Lymphotactin Alternative name(s): ATAC C motif chemokine 1 Cytokine SCM-1 Lymphotaxin SCM-1-alpha Small-inducible cytokine C1 XC chemokine ligand 1
Gene namesⁱ	Name:XCL1 Synonyms:LTN, SCYC1
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 1

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000143184.4
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:10645 XCL1
MIMⁱ	600250 gene
neXtProtⁱ	NX_P47992

Keywords - Cellular componentⁱ

Secreted

Pathology & Biotechⁱ

Organism-specific databases

DisGeNET More...DisGeNETⁱ	6375
Open Targets More...OpenTargetsⁱ	ENSG00000143184
PharmGKBⁱ	PA35575

Polymorphism and mutation databases

BioMutaⁱ	XCL1
DMDMⁱ	1346471

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 21	Sequence analysisAdd BLAST		21
ChainⁱPRO_0000005248	22 – 114	LymphotactinAdd BLAST		93

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Disulfide bondⁱ	32 ↔ 69	1 Publication

Keywords - PTMⁱ

Disulfide bond

Proteomic databases

PaxDbⁱ	P47992
PeptideAtlas More...PeptideAtlasⁱ	P47992
PRIDEⁱ	P47992
ProteomicsDBⁱ	55830

PTM databases

PhosphoSitePlusⁱ	P47992

PhosphoSitePlusⁱ

P47992

Miscellaneous databases

PMAP-CutDBⁱ	P47992

PMAP-CutDBⁱ

P47992

Expressionⁱ

Tissue specificityⁱ

Highest level in spleen, lower in peripheral leukocytes and very low levels in lung, colon and small intestine.

Gene expression databases

Bgeeⁱ	ENSG00000143184 Expressed in 65 organ(s), highest expression level in leukocyte
CleanExⁱ	HS_XCL1
Genevisibleⁱ	P47992 HS

Organism-specific databases

Human Protein Atlas More...HPAⁱ	HPA057725

HPAⁱ

HPA057725

Interactionⁱ

Binary interactionsⁱ

With	Entry	#Exp.	IntAct
CCL13	Q99616	2	EBI-10209901,EBI-725342
CCL26	Q9Y258	2	EBI-10209901,EBI-7783416
CCL5	P13501	3	EBI-10209901,EBI-2848366
CXCL12	P48061	2	EBI-10209901,EBI-3913254
PF4	P02776	2	EBI-10209901,EBI-2565740
PF4V1	P10720	2	EBI-10209901,EBI-1223944

GO - Molecular functionⁱ

CCR chemokine receptor binding Source: GO_Central
chemokine activity
Source: BHF-UCL
Inferred from direct assayⁱ
- 7602097
chemokine receptor binding
Source: BHF-UCL
Inferred from direct assayⁱ
- 9632725
protein homodimerization activity
Source: BHF-UCL
Inferred from direct assayⁱ
- 11889129

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	112277, 9 interactors
Database of interacting proteins More...DIPⁱ	DIP-29876N
IntActⁱ	P47992, 18 interactors
STRINGⁱ	9606.ENSP00000356792

Structureⁱ

Secondary structure

Legend: HelixTurnBeta strandPDB Structure known for this area

Feature key	Position(s)	DescriptionActions	Length
Beta strandⁱ	33 – 35	Combined sources	3
Helixⁱ	42 – 44	Combined sources	3
Beta strandⁱ	45 – 50	Combined sources	6
Beta strandⁱ	53 – 55	Combined sources	3
Beta strandⁱ	57 – 62	Combined sources	6
Beta strandⁱ	65 – 70	Combined sources	6
Beta strandⁱ	72 – 74	Combined sources	3
Helixⁱ	75 – 82	Combined sources	8
Helixⁱ	85 – 87	Combined sources	3
Turnⁱ	88 – 91	Combined sources	4

Show more details

3D structure databases

ProteinModelPortalⁱ	P47992
SMRⁱ	P47992
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Miscellaneous databases

EvolutionaryTraceⁱ	P47992

EvolutionaryTraceⁱ

P47992

Family & Domainsⁱ

Sequence similaritiesⁱ

Belongs to the intercrine gamma family.Curated

Keywords - Domainⁱ

Signal

Phylogenomic databases

eggNOGⁱ	ENOG410IZ5E Eukaryota ENOG4111C3M LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000005120
HOGENOMⁱ	HOG000036685
HOVERGENⁱ	HBG102118
InParanoidⁱ	P47992
KEGG Orthology (KO) More...KOⁱ	K05507
OMAⁱ	WVKKAVE
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G15G5
PhylomeDBⁱ	P47992
TreeFamⁱ	TF334888

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00271 Chemokine_C, 1 hit
InterProⁱ	View protein in InterPro IPR001811 Chemokine_IL8-like_dom IPR008105 Chemokine_XCL1/XCL2 IPR036048 Interleukin_8-like_sf
PANTHERⁱ	PTHR12015:SF101 PTHR12015:SF101, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00048 IL8, 1 hit
PRINTSⁱ	PR01731 LYMPHOTACTIN
SMARTⁱ	View protein in SMART SM00199 SCY, 1 hit
SUPFAMⁱ	SSF54117 SSF54117, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

Sequence processingⁱ: The displayed sequence is further processed into a mature form.

P47992-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MRLLILALLG ICSLTAYIVE GVGSEVSDKR TCVSLTTQRL PVSRIKTYTI 
        60         70         80         90        100
TEGSLRAVIF ITKRGLKVCA DPQATWVRDV VRSMDRKSNT RNNMIQTKPT 
       110 
GTQQSTNTAV TLTG

Length:114

Mass (Da):12,517

Last modified:February 1, 1996 - v1

Checksum:ⁱFABA16063C3FC165

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U23772 mRNA Translation: AAC50164.1 D43768 mRNA Translation: BAA07825.1 X86474 mRNA Translation: CAA60198.1 D63790 Genomic DNA Translation: BAA09859.1 AL031736 Genomic DNA No translation available. BC069817 mRNA Translation: AAH69817.1 BC070309 mRNA Translation: AAH70309.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS1274.1
PIRⁱ	S60650 ETHUL
NCBI Reference Sequences More...RefSeqⁱ	NP_002986.1, NM_002995.2 XP_011508167.1, XM_011509865.2
UniGeneⁱ	Hs.458346 Hs.546295

Genome annotation databases

Ensemblⁱ	ENST00000367818; ENSP00000356792; ENSG00000143184
GeneIDⁱ	6375
KEGGⁱ	hsa:6375
UCSC genome browser More...UCSCⁱ	uc001gfo.2 human

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
P47992	Cytokine SCM-1 beta		HUMAN		114	UniRef90_P47992
XCL1 isoform 1		PANTR		114
Uncharacterized protein		PANPA		114
Uncharacterized protein		GORGO		114
Chemokine XCL1/LYMPHOTACTIN		MACMU		114
+16

Protein	Similar proteins		Species	Score	Length	Source
P47992	Cytokine SCM-1 beta		HUMAN		114	UniRef50_P47992
XCL2 isoform 1		PONAB		114
Chemokine XCL1/LYMPHOTACTIN		MACMU		114
Uncharacterized protein		COLAP		114
Uncharacterized protein		CHLSB		114
+29

Cross-referencesⁱ

Web resourcesⁱ

Wikipedia

XCL1 entry

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U23772 mRNA Translation: AAC50164.1 D43768 mRNA Translation: BAA07825.1 X86474 mRNA Translation: CAA60198.1 D63790 Genomic DNA Translation: BAA09859.1 AL031736 Genomic DNA No translation available. BC069817 mRNA Translation: AAH69817.1 BC070309 mRNA Translation: AAH70309.1
CCDSⁱ	CCDS1274.1
PIRⁱ	S60650 ETHUL
RefSeqⁱ	NP_002986.1, NM_002995.2 XP_011508167.1, XM_011509865.2
UniGeneⁱ	Hs.458346 Hs.546295

3D structure databases

Select the link destinations: Protein Data Bank Europe More...PDBeⁱ Protein Data Bank RCSB More...RCSB PDBⁱ Protein Data Bank Japan More...PDBjⁱ Links Updated	PDB entry	Method	Resolution (Å)	Chain	Positions	PDBsum
	1J8I	NMR	-	A	22-114	[»]
	1J9O	NMR	-	A	22-114	[»]
	2HDM	NMR	-	A	23-114	[»]
	2JP1	NMR	-	A/B	22-114	[»]
	2N54	NMR	-	A/B	22-114	[»]
	2NYZ	X-ray	2.60	D/E	22-114	[»]
ProteinModelPortalⁱ	P47992
SMRⁱ	P47992
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	112277, 9 interactors
DIPⁱ	DIP-29876N
IntActⁱ	P47992, 18 interactors
STRINGⁱ	9606.ENSP00000356792

Protein family/group databases

MoonDBⁱ	P47992 Curated
MoonProtⁱ	P47992

PTM databases

PhosphoSitePlusⁱ	P47992

PhosphoSitePlusⁱ

P47992

Polymorphism and mutation databases

BioMutaⁱ	XCL1
DMDMⁱ	1346471

Proteomic databases

PaxDbⁱ	P47992
PeptideAtlasⁱ	P47992
PRIDEⁱ	P47992
ProteomicsDBⁱ	55830

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENST00000367818; ENSP00000356792; ENSG00000143184
GeneIDⁱ	6375
KEGGⁱ	hsa:6375
UCSCⁱ	uc001gfo.2 human

Organism-specific databases

CTDⁱ	6375
DisGeNETⁱ	6375
EuPathDBⁱ	HostDB:ENSG00000143184.4
GeneCardsⁱ	XCL1
HGNCⁱ	HGNC:10645 XCL1
HPAⁱ	HPA057725
MIMⁱ	600250 gene
neXtProtⁱ	NX_P47992
OpenTargetsⁱ	ENSG00000143184
PharmGKBⁱ	PA35575
GenAtlas: human gene database More...GenAtlasⁱ	Search...

Phylogenomic databases

eggNOGⁱ	ENOG410IZ5E Eukaryota ENOG4111C3M LUCA
GeneTreeⁱ	ENSGT00390000005120
HOGENOMⁱ	HOG000036685
HOVERGENⁱ	HBG102118
InParanoidⁱ	P47992
KOⁱ	K05507
OMAⁱ	WVKKAVE
OrthoDBⁱ	EOG091G15G5
PhylomeDBⁱ	P47992
TreeFamⁱ	TF334888

Enzyme and pathway databases

Reactomeⁱ	R-HSA-380108 Chemokine receptors bind chemokines R-HSA-416476 G alpha (q) signalling events
SIGNORⁱ	P47992

Miscellaneous databases

ChiTaRSⁱ	XCL1 human
EvolutionaryTraceⁱ	P47992
GenomeRNAiⁱ	6375
PMAP-CutDBⁱ	P47992
Protein Ontology More...PROⁱ	PR:P47992
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSG00000143184 Expressed in 65 organ(s), highest expression level in leukocyte
CleanExⁱ	HS_XCL1
Genevisibleⁱ	P47992 HS

Family and domain databases

CDDⁱ	cd00271 Chemokine_C, 1 hit
InterProⁱ	View protein in InterPro IPR001811 Chemokine_IL8-like_dom IPR008105 Chemokine_XCL1/XCL2 IPR036048 Interleukin_8-like_sf
PANTHERⁱ	PTHR12015:SF101 PTHR12015:SF101, 1 hit
Pfamⁱ	View protein in Pfam PF00048 IL8, 1 hit
PRINTSⁱ	PR01731 LYMPHOTACTIN
SMARTⁱ	View protein in SMART SM00199 SCY, 1 hit
SUPFAMⁱ	SSF54117 SSF54117, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	XCL1_HUMAN
Accessionⁱ	P47992Primary (citable) accession number: P47992 Secondary accession number(s): Q52MA8
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	February 1, 1996
	Last sequence update:	February 1, 1996
	Last modified:	September 12, 2018
	This is version 162 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

3D-structure, Complete proteome, Reference proteome

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - P47992 (XCL1_HUMAN)

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Lymphotactin

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

Protein family/group databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted

Extracellular region or secreted

Other locations

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

Miscellaneous databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Organism-specific databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

3D structure databases

Miscellaneous databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

PTM databases

Polymorphism and mutation databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Keywords - Domainⁱ

Cross-referencesⁱ

Web resourcesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ