Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 169 (18 Sep 2019)
Sequence version 1 (01 Feb 1996)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

Protein JSN1

Gene

JSN1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Miscellaneous

Present with 784 molecules/cell in log phase SD medium.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
YEAST:G3O-31718-MONOMER

Protein family/group databases

MoonDB Database of extreme multifunctional and moonlighting proteins

More...
MoonDBi
P47135 Predicted

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein JSN1
Alternative name(s):
Pumilio homology domain family member 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:JSN1
Synonyms:PUF1
Ordered Locus Names:YJR091C
ORF Names:J1890
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri559292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome X

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
FungiDB:YJR091C

Saccharomyces Genome Database

More...
SGDi
S000003851 JSN1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000759221 – 1091Protein JSN1Add BLAST1091

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei129PhosphoserineCombined sources1
Modified residuei131PhosphothreonineCombined sources1
Modified residuei160PhosphoserineCombined sources1
Modified residuei168PhosphoserineCombined sources1
Modified residuei913PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
P47135

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P47135

PRoteomics IDEntifications database

More...
PRIDEi
P47135

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P47135

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
33845, 141 interactors

Database of interacting proteins

More...
DIPi
DIP-1281N

Protein interaction database and analysis system

More...
IntActi
P47135, 20 interactors

Molecular INTeraction database

More...
MINTi
P47135

STRING: functional protein association networks

More...
STRINGi
4932.YJR091C

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
P47135

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini340 – 426RRMPROSITE-ProRule annotationAdd BLAST87
Domaini557 – 913PUM-HDPROSITE-ProRule annotationAdd BLAST357
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati617 – 652Pumilio 1Add BLAST36
Repeati653 – 689Pumilio 2Add BLAST37
Repeati690 – 724Pumilio 3Add BLAST35
Repeati725 – 760Pumilio 4Add BLAST36
Repeati801 – 837Pumilio 5Add BLAST37

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi507 – 510Poly-Asn4
Compositional biasi515 – 518Poly-Asn4
Compositional biasi923 – 927Poly-Gln5
Compositional biasi967 – 970Poly-Thr4
Compositional biasi1065 – 1076Poly-AsnAdd BLAST12

Keywords - Domaini

Repeat

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000113136

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P47135

KEGG Orthology (KO)

More...
KOi
K17974

Identification of Orthologs from Complete Genome Data

More...
OMAi
CLEAHDI

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 1 hit
3.30.70.330, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR033133 PUM-HD
IPR001313 Pumilio_RNA-bd_rpt
IPR035979 RBD_domain_sf
IPR000504 RRM_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00806 PUF, 3 hits
PF00076 RRM_1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00025 Pumilio, 6 hits
SM00360 RRM, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit
SSF54928 SSF54928, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50302 PUM, 5 hits
PS50303 PUM_HD, 1 hit
PS50102 RRM, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P47135-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDKSKQMNIN NLSNIPEVID PGITIPIYEE EYENNGESNS QLQQQPQKLG
60 70 80 90 100
SYRSRAGKFS NTLSNLLPSI SAKLHHSKKN SHGKNGAEFS SSNNSSQSTV
110 120 130 140 150
ASKTPRASPS RSKMMESSID GVTMDRPGSL TPPQDMEKLV HFPDSSNNFL
160 170 180 190 200
IPAPRGSSDS FNLPHQISRT RNNTMSSQIT SISSIAPKPR TSSGIWSSNA
210 220 230 240 250
SANDPMQQHL LQQLQPTTSN NTTNSNTLND YSTKTAYFDN MVSTSGSQMA
260 270 280 290 300
DNKMNTNNLA IPNSVWSNTR QRSQSNASSI YTDAPLYEQP ARASISSHYT
310 320 330 340 350
IPTQESPLIA DEIDPQSINW VTMDPTVPSI NQISNLLPTN TISISNVFPL
360 370 380 390 400
QHQQPQLNNA INLTSTSLAT LCSKYGEVIS ARTLRNLNMA LVEFSSVESA
410 420 430 440 450
VKALDSLQGK EVSMIGAPSK ISFAKILPMH QQPPQFLLNS QGLPLGLENN
460 470 480 490 500
NLQPQPLLQE QLFNGAVTFQ QQGNVSIPVF NQQSQQSQHQ NHSSGSAGFS
510 520 530 540 550
NVLHGYNNNN SMHGNNNNSA NEKEQCPFPL PPPNVNEKED LLREIIELFE
560 570 580 590 600
ANSDEYQINS LIKKSLNHKG TSDTQNFGPL PEPLSGREFD PPKLRELRKS
610 620 630 640 650
IDSNAFSDLE IEQLAIAMLD ELPELSSDYL GNTIVQKLFE HSSDIIKDIM
660 670 680 690 700
LRKTSKYLTS MGVHKNGTWA CQKMITMAHT PRQIMQVTQG VKDYCTPLIN
710 720 730 740 750
DQFGNYVIQC VLKFGFPWNQ FIFESIIANF WVIVQNRYGA RAVRACLEAH
760 770 780 790 800
DIVTPEQSIV LSAMIVTYAE YLSTNSNGAL LVTWFLDTSV LPNRHSILAP
810 820 830 840 850
RLTKRIVELC GHRLASLTIL KVLNYRGDDN ARKIILDSLF GNVNAHDSSP
860 870 880 890 900
PKELTKLLCE TNYGPTFVHK VLAMPLLEDD LRAHIIKQVR KVLTDSTQIQ
910 920 930 940 950
PSRRLLEEVG LASPSSTHNK TKQQQQQHHN SSISHMFATP DTSGQHMRGL
960 970 980 990 1000
SVSSVKSGGS KHTTMNTTTT NGSSASTLSP GQPLNANSNS SMGYFSYPGV
1010 1020 1030 1040 1050
FPVSGFSGNA SNGYAMNNDD LSSQFDMLNF NNGTRLSLPQ LSLTNHNNTT
1060 1070 1080 1090
MELVNNVGSS QPHTNNNNNN NNTNYNDDNT VFETLTLHSA N
Length:1,091
Mass (Da):120,374
Last modified:February 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA168489189C67B22
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
L43493 Genomic DNA Translation: AAC41666.1
Z49591 Genomic DNA Translation: CAA89618.1
L47993 Genomic DNA Translation: AAB39314.1
BK006943 Genomic DNA Translation: DAA08875.1

Protein sequence database of the Protein Information Resource

More...
PIRi
S57112

NCBI Reference Sequences

More...
RefSeqi
NP_012624.1, NM_001181748.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
YJR091C_mRNA; YJR091C; YJR091C

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
853553

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sce:YJR091C

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L43493 Genomic DNA Translation: AAC41666.1
Z49591 Genomic DNA Translation: CAA89618.1
L47993 Genomic DNA Translation: AAB39314.1
BK006943 Genomic DNA Translation: DAA08875.1
PIRiS57112
RefSeqiNP_012624.1, NM_001181748.1

3D structure databases

SMRiP47135
ModBaseiSearch...

Protein-protein interaction databases

BioGridi33845, 141 interactors
DIPiDIP-1281N
IntActiP47135, 20 interactors
MINTiP47135
STRINGi4932.YJR091C

Protein family/group databases

MoonDBiP47135 Predicted

PTM databases

iPTMnetiP47135

Proteomic databases

MaxQBiP47135
PaxDbiP47135
PRIDEiP47135

Genome annotation databases

EnsemblFungiiYJR091C_mRNA; YJR091C; YJR091C
GeneIDi853553
KEGGisce:YJR091C

Organism-specific databases

EuPathDBiFungiDB:YJR091C
SGDiS000003851 JSN1

Phylogenomic databases

HOGENOMiHOG000113136
InParanoidiP47135
KOiK17974
OMAiCLEAHDI

Enzyme and pathway databases

BioCyciYEAST:G3O-31718-MONOMER

Miscellaneous databases

Protein Ontology

More...
PROi
PR:P47135

Family and domain databases

Gene3Di1.25.10.10, 1 hit
3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR033133 PUM-HD
IPR001313 Pumilio_RNA-bd_rpt
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00806 PUF, 3 hits
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00025 Pumilio, 6 hits
SM00360 RRM, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
SSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50302 PUM, 5 hits
PS50303 PUM_HD, 1 hit
PS50102 RRM, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiJSN1_YEAST
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P47135
Secondary accession number(s): D6VWQ9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: September 18, 2019
This is version 169 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again