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Entry version 115 (02 Jun 2021)
Sequence version 2 (07 Jul 2009)
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Protein

Uncharacterized protein YqbO

Gene

yqbO

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BSUB:BSU26030-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized protein YqbO
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yqbO
Ordered Locus Names:BSU26030
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus subtilis (strain 168)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri224308 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001570 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000497661 – 1585Uncharacterized protein YqbOAdd BLAST1585

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei970Phosphoserine1 Publication1
Modified residuei972Phosphoserine1 Publication1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
P45931

PRoteomics IDEntifications database

More...
PRIDEi
P45931

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
P45931

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

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IntActi
P45931, 15 interactors

STRING: functional protein association networks

More...
STRINGi
224308.BSU26030

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni586 – 627DisorderedSequence analysisAdd BLAST42
Regioni645 – 692DisorderedSequence analysisAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili12 – 59Sequence analysisAdd BLAST48

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi590 – 604Polar residuesSequence analysisAdd BLAST15
Compositional biasi611 – 627Polar residuesSequence analysisAdd BLAST17

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

To B.subtilis XkdO.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG3953, Bacteria
COG5280, Bacteria

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
P45931

Identification of Orthologs from Complete Genome Data

More...
OMAi
NVWNPIS

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR023346, Lysozyme-like_dom_sf
IPR008258, Transglycosylase_SLT_dom_1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01464, SLT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53955, SSF53955, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P45931-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKLTATFEL HDKISRKLRM IQGNAERLKR AANGPLIFEA EDRTERVMRQ
60 70 80 90 100
IDRSANRLTA RARLLEMGLD DRVSNGLHSI RQQAEDLTEG SHEVTVSVND
110 120 130 140 150
QATPRFRLIR GGLTDLNSSH AEPTVSVRDH ASNQLDEIRR HVTDVDSEHA
160 170 180 190 200
EPTVSIKDRA SAALDAIEAK IDSLKGATIT LAVAGGFSAG SIMGSGKSTM
210 220 230 240 250
SQDAYVSATS NVNKKDVAKM TDQIYFNNKA GSSREEVSLS LRNLSQQTGA
260 270 280 290 300
SKKALAELTE SSSKIAQLMN ADQAEVDRAF SSMYNNLKLS GKQSGDLIAY
310 320 330 340 350
VYRNAGDQAD DLLDTMNEYS STFKDLKLTG GQIANAMIKG TKGGARNFDN
360 370 380 390 400
LADSMREFNI RRTEMSDSQV DAFKTLFGAK ETKKMFKGFK DGSISGEESL
410 420 430 440 450
FRVAKALSKV KDKTKRAAIA TELIGTQYED LKQPILDMAE GIGTSAKTSG
460 470 480 490 500
ELERSFTKLR DNNPMTPVND AMRDFESISK DMGTSLLTGL GPAFDKISSF
510 520 530 540 550
INSKEGQEKL KEIKKDIADL GEEIGDKLNV AIEWSVNHWD DLKTAIKVVI
560 570 580 590 600
PSLIGLIGYL KILRPLLKGI GTVGSDAAGV IRKLIPKRTP KAGTNTQSER
610 620 630 640 650
RNRNSNRNAS TRGRESKTAT GPTSLPRSGS LTYCCCSDGG KNDRIRRRRG
660 670 680 690 700
KRVLGRRGNP NRMNPSDSSI AVSSERLERR RSGRTVGTNP TRDSRSAIIT
710 720 730 740 750
TRSELYSAGR AAGGTSKFGK VLSPLKSVGK FAKGVPLLGT ALAATDLIGM
760 770 780 790 800
NKDNVGEKIG SAGGGLAGAA TGAAIGSVIP GVGTAIGGLV GGIAGTMGGS
810 820 830 840 850
SLGKAFDGSE VKKKLNSTLF DQKWWSEKWS GIKSNAKTSI NGLSDTWSNV
860 870 880 890 900
KEKVKSTLFN SEWWSEKWSG VKSWAQNKWN SASSVWESVK GKIKSTLFSE
910 920 930 940 950
KWWSGKWEGV KSWAQSKWDS ASSVWQSVKG KLKSTLFSEK WWSGKWESVK
960 970 980 990 1000
SWSKNKWDNA KSIWKSVKSS ISETLFSKKW WSEKWQSVKE LGSSILGGVK
1010 1020 1030 1040 1050
EVGGKVASSA KKTAGKAWGY VKSGVNYLFG SGKEKPKKHA TGGYITKPTI
1060 1070 1080 1090 1100
SWIGEAGKEF VIPVENNKGR GKMLLSQAAS KLGMSVVDDI ASASSAGGEP
1110 1120 1130 1140 1150
ATSPLVRSAA VTASVSPIID TSSLDEQATS FGQQFTKSFD QGIRDNVVSM
1160 1170 1180 1190 1200
EAWKQKNVGQ PMNNLISYSP NYGKQVVNGY AKGQNSTSTG TDGFLQTKVK
1210 1220 1230 1240 1250
MPFQNTVNKS SSWGSGTIKG FASGQNSSQT GTDQYVSTHI NKPFIRSKES
1260 1270 1280 1290 1300
SNGWGSGMIG NFVSGMTSKA SEVNEAAKEL AKKVEKAFRE ELDIHSPSRV
1310 1320 1330 1340 1350
MMSLGRFASI GIVKGLDSVD VKKFAEKQAG SLAAAYSGMG AVSGNVKQWL
1360 1370 1380 1390 1400
MAAIMATKTP MSWLPGLMTI AQHESGGNPK AINLWDSNAK AGHPSQGLMQ
1410 1420 1430 1440 1450
TIPSTFNAHK LPGMNNILNP IHNAAAAIGY IKSRYGSINN VPGIRSMRHG
1460 1470 1480 1490 1500
GPYVGYANGG LITKEQIARV GEGNKREWII PEERGIRGRY LLAQAAKALG
1510 1520 1530 1540 1550
MEVTDPSEKG QTELSSGQVT AATTGRNQTT FKAAGGKEVI IQFNGDQHFH
1560 1570 1580
NDQDMNSLVA KIKQALVDEL EQDINIGTKG VVAFD
Length:1,585
Mass (Da):171,010
Last modified:July 7, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i61D32DCCD94F4D48
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti188S → P in BAA06947 (PubMed:7704261).Curated1
Sequence conflicti188S → P in BAA12411 (PubMed:8969508).Curated1
Sequence conflicti884S → P in BAA06947 (PubMed:7704261).Curated1
Sequence conflicti884S → P in BAA12411 (PubMed:8969508).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
D32216 Genomic DNA Translation: BAA06947.1
D84432 Genomic DNA Translation: BAA12411.1
AL009126 Genomic DNA Translation: CAB14544.2

Protein sequence database of the Protein Information Resource

More...
PIRi
B69948

NCBI Reference Sequences

More...
RefSeqi
NP_390480.2, NC_000964.3
WP_003246092.1, NZ_JNCM01000036.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAB14544; CAB14544; BSU_26030

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
937747

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bsu:BSU26030

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|224308.179.peg.2828

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D32216 Genomic DNA Translation: BAA06947.1
D84432 Genomic DNA Translation: BAA12411.1
AL009126 Genomic DNA Translation: CAB14544.2
PIRiB69948
RefSeqiNP_390480.2, NC_000964.3
WP_003246092.1, NZ_JNCM01000036.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

IntActiP45931, 15 interactors
STRINGi224308.BSU26030

PTM databases

iPTMnetiP45931

Proteomic databases

PaxDbiP45931
PRIDEiP45931

Genome annotation databases

EnsemblBacteriaiCAB14544; CAB14544; BSU_26030
GeneIDi937747
KEGGibsu:BSU26030
PATRICifig|224308.179.peg.2828

Phylogenomic databases

eggNOGiCOG3953, Bacteria
COG5280, Bacteria
InParanoidiP45931
OMAiNVWNPIS

Enzyme and pathway databases

BioCyciBSUB:BSU26030-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR023346, Lysozyme-like_dom_sf
IPR008258, Transglycosylase_SLT_dom_1
PfamiView protein in Pfam
PF01464, SLT, 1 hit
SUPFAMiSSF53955, SSF53955, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYQBO_BACSU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P45931
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 7, 2009
Last modified: June 2, 2021
This is version 115 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
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