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Protein

Cyclin-D1-1

Gene

CYCD1-1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.1 Publication

GO - Biological processi

Keywordsi

Molecular functionCyclin
Biological processCell cycle, Cell division

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-D1-1
Alternative name(s):
Cyclin-delta-1
Short name:
Cyclin-d1
G1/S-specific cyclin-D1-1
Short name:
CycD1;1
Gene namesi
Name:CYCD1-1
Synonyms:CYCD1
Ordered Locus Names:At1g70210
ORF Names:F20P5.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G70210
TAIRilocus:2020663 AT1G70210

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000804451 – 339Cyclin-D1-1Add BLAST339

Proteomic databases

PaxDbiP42751

Expressioni

Tissue specificityi

Expressed in roots, leaves and flowers.1 Publication

Developmental stagei

Transiently expressed in the root tip during seed germination up to about 21 hours after stratification.1 Publication

Gene expression databases

ExpressionAtlasiP42751 baseline and differential
GenevisibleiP42751 AT

Interactioni

Subunit structurei

Interacts with CDKA-1 and KRP6/ICK4.2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
CDKB2-1Q8LF802EBI-2025690,EBI-1253579

Protein-protein interaction databases

BioGridi28578, 13 interactors
IntActiP42751, 4 interactors
STRINGi3702.AT1G70210.1

Structurei

3D structure databases

ProteinModelPortaliP42751
SMRiP42751
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the cyclin family. Cyclin D subfamily.Curated

Phylogenomic databases

eggNOGiKOG0656 Eukaryota
ENOG410XRKC LUCA
HOGENOMiHOG000242458
InParanoidiP42751
KOiK18810
OMAiQEYNGFL
OrthoDBiEOG09360FYD
PhylomeDBiP42751

Family and domain databases

CDDicd00043 CYCLIN, 2 hits
InterProiView protein in InterPro
IPR039361 Cyclin
IPR013763 Cyclin-like
IPR036915 Cyclin-like_sf
IPR004367 Cyclin_C-dom
IPR006671 Cyclin_N
IPR036280 Multihaem_cyt_sf
PANTHERiPTHR10177 PTHR10177, 1 hit
PfamiView protein in Pfam
PF02984 Cyclin_C, 1 hit
PF00134 Cyclin_N, 1 hit
SMARTiView protein in SMART
SM00385 CYCLIN, 1 hit
SM01332 Cyclin_C, 1 hit
SUPFAMiSSF47954 SSF47954, 1 hit
SSF48695 SSF48695, 1 hit
PROSITEiView protein in PROSITE
PS00292 CYCLINS, 1 hit

Sequencei

Sequence statusi: Complete.

P42751-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD
60 70 80 90 100
SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
110 120 130 140 150
LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF
160 170 180 190 200
DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
210 220 230 240 250
GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV
260 270 280 290 300
VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
310 320 330
ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Length:339
Mass (Da):38,277
Last modified:February 15, 2005 - v3
Checksum:i65D2449D5DBCE9D6
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti314 – 317Missing in CAA58285 (PubMed:7696881).Curated4

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83369 mRNA Translation: CAA58285.1
AC002062 Genomic DNA Translation: AAB61096.1
CP002684 Genomic DNA Translation: AEE35034.1
AK117189 mRNA Translation: BAC41865.1
BT005315 mRNA Translation: AAO63379.1
AF208693 Genomic DNA Translation: AAL35986.1
PIRiA96725
S51650
RefSeqiNP_177178.1, NM_105689.4
UniGeneiAt.10298

Genome annotation databases

EnsemblPlantsiAT1G70210.1; AT1G70210.1; AT1G70210
GeneIDi843357
GrameneiAT1G70210.1; AT1G70210.1; AT1G70210
KEGGiath:AT1G70210

Similar proteinsi

Entry informationi

Entry nameiCCD11_ARATH
AccessioniPrimary (citable) accession number: P42751
Secondary accession number(s): O04525, Q8W2K2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: February 15, 2005
Last modified: July 18, 2018
This is version 128 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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